Lineage for d5ldic_ (5ldi C:)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2956563Fold d.61: LigT-like [55143] (1 superfamily)
    duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
  4. 2956564Superfamily d.61.1: LigT-like [55144] (5 families) (S)
  5. 2956626Family d.61.1.0: automated matches [191492] (1 protein)
    not a true family
  6. 2956627Protein automated matches [190796] (6 species)
    not a true protein
  7. 2956633Species Escherichia coli [TaxId:469008] [328566] (7 PDB entries)
  8. 2956642Domain d5ldic_: 5ldi C: [328591]
    automated match to d4qakb_
    complexed with cl

Details for d5ldic_

PDB Entry: 5ldi (more details), 2.1 Å

PDB Description: crystal structure of e.coli ligt in apo form
PDB Compounds: (C:) RNA 2',3'-cyclic phosphodiesterase

SCOPe Domain Sequences for d5ldic_:

Sequence, based on SEQRES records: (download)

>d5ldic_ d.61.1.0 (C:) automated matches {Escherichia coli [TaxId: 469008]}
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrp
fhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

Sequence, based on observed residues (ATOM records): (download)

>d5ldic_ d.61.1.0 (C:) automated matches {Escherichia coli [TaxId: 469008]}
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcrpfhph
itllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

SCOPe Domain Coordinates for d5ldic_:

Click to download the PDB-style file with coordinates for d5ldic_.
(The format of our PDB-style files is described here.)

Timeline for d5ldic_: