Lineage for d1iova1 (1iov A:1-96)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2106806Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
    3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
    possible rudiment form of Rossmann-fold domain
  4. 2106807Superfamily c.30.1: PreATP-grasp domain [52440] (10 families) (S)
    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
  5. 2106985Family c.30.1.2: D-Alanine ligase N-terminal domain [52452] (2 protein domains)
  6. 2106986Protein D-Ala-D-Ala ligase, N-domain [52453] (3 species)
  7. 2106995Species Escherichia coli, gene ddlB [TaxId:562] [52454] (3 PDB entries)
  8. 2106997Domain d1iova1: 1iov A:1-96 [31714]
    Other proteins in same PDB: d1iova2
    complexed with adp, mg, pob

Details for d1iova1

PDB Entry: 1iov (more details), 2.2 Å

PDB Description: complex of d-ala:d-ala ligase with adp and a phosphoryl phosphonate
PDB Compounds: (A:) d-ala:d-ala ligase

SCOPe Domain Sequences for d1iova1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1iova1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

SCOPe Domain Coordinates for d1iova1:

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Timeline for d1iova1:

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