SCOPe 2.08: Protein: D-Ala-D-Ala ligase, N-domain

Lineage for Protein: D-Ala-D-Ala ligase, N-domain

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
possible rudiment form of Rossmann-fold domain
Superfamily c.30.1: PreATP-grasp domain [52440] (10 families)
precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
Family c.30.1.2: D-Alanine ligase N-terminal domain [52452] (2 proteins)
Protein D-Ala-D-Ala ligase, N-domain [52453] (3 species)

Species:

Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [256401] (1 PDB entry)
- Domains for 3r5x:
  1. Domain d3r5xa2: 3r5x A:1-93 [239683]
    Other proteins in same PDB: d3r5xa1, d3r5xa3, d3r5xb1, d3r5xb3, d3r5xc1, d3r5xc3, d3r5xd1, d3r5xd3
    complexed with acy, atp, ca, edo, mg
  2. Domain d3r5xb2: 3r5x B:1-93 [239684]
    Other proteins in same PDB: d3r5xa1, d3r5xa3, d3r5xb1, d3r5xb3, d3r5xc1, d3r5xc3, d3r5xd1, d3r5xd3
    complexed with acy, atp, ca, edo, mg
  3. Domain d3r5xc2: 3r5x C:1-93 [239685]
    Other proteins in same PDB: d3r5xa1, d3r5xa3, d3r5xb1, d3r5xb3, d3r5xc1, d3r5xc3, d3r5xd1, d3r5xd3
    complexed with acy, atp, ca, edo, mg
  4. Domain d3r5xd2: 3r5x D:1-93 [239686]
    Other proteins in same PDB: d3r5xa1, d3r5xa3, d3r5xb1, d3r5xb3, d3r5xc1, d3r5xc3, d3r5xd1, d3r5xd3
    complexed with acy, atp, ca, edo, mg
Bacillus anthracis [TaxId:198094] [256400] (1 PDB entry)
- Domains for 3r23:
  1. Domain d3r23a2: 3r23 A:1-93 [239678]
    Other proteins in same PDB: d3r23a1, d3r23a3, d3r23b1, d3r23b3
    complexed with edo
  2. Domain d3r23b2: 3r23 B:1-93 [239679]
    Other proteins in same PDB: d3r23a1, d3r23a3, d3r23b1, d3r23b3
    complexed with edo
Escherichia coli, gene ddlB [TaxId:562] [52454] (3 PDB entries)
1. Domain for 1iov:
  - Domain d1iova1: 1iov A:1-96 [31714]
    Other proteins in same PDB: d1iova2
    complexed with adp, mg, pob
2. Domain for 1iow:
  - Domain d1iowa1: 1iow A:1-96 [31713]
    Other proteins in same PDB: d1iowa2
    complexed with adp, mg, phy
3. Domain for 2dln:
  - Domain d2dlna1: 2dln A:1-96 [31715]
    Other proteins in same PDB: d2dlna2
    complexed with adp, mg, phy

More info for Protein D-Ala-D-Ala ligase, N-domain from c.30.1.2: D-Alanine ligase N-terminal domain

Timeline for Protein D-Ala-D-Ala ligase, N-domain from c.30.1.2: D-Alanine ligase N-terminal domain:

Protein D-Ala-D-Ala ligase, N-domain from c.30.1.2: D-Alanine ligase N-terminal domain first appeared (with stable ids) in SCOP 1.55, called Protein D-Ala-D-Ala ligase from c.30.1.2: D-Alanine ligase N-terminal domain
Protein D-Ala-D-Ala ligase, N-domain from c.30.1.2: D-Alanine ligase N-terminal domain appears in SCOPe 2.07