SCOPe 2.07: Domain d5cdyd_: 5cdy D:

Lineage for d5cdyd_ (5cdy D:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein automated matches [190085] (58 species)
   not a true protein

7. Species Yersinia pestis [TaxId:632] [279426] (2 PDB entries)

8. Domain d5cdyd_: 5cdy D: [279433]
   automated match to d3rshb_
   complexed with gol, po4

Details for d5cdyd_

PDB Entry: 5cdy, 2.85 Å

PDB Description: the crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase (fabg) from yersinia pestis at 2.85a resolution

PDB Compounds: (D:) 3-oxoacyl-[acyl-carrier protein] reductase

SCOPe Domain Sequences for d5cdyd_:

Sequence, based on SEQRES records:

>d5cdyd_ c.2.1.2 (D:) automated matches {Yersinia pestis [TaxId: 632]}
msfegkialvtgasrgigraiaellvergacvigtatsekgaeaisaylgengkglmlnv
vdptsidtvlatiraefgevdilvnnagitrdnllmrmkddewqdiidtnltsvfrlska
vmrammkkrfgriitigsvvgtmgnagqvnyaaakagvigfskslarevasrgitvnvva
pgfietdmtrtltddqragilaqvpanrlgdakeiasavaflasdeasyisgetlhvngg

Sequence, based on observed residues (ATOM records):

>d5cdyd_ c.2.1.2 (D:) automated matches {Yersinia pestis [TaxId: 632]}
msfegkialvtgasrgigraiaellvergacvigtatsekgaeaisaylgengkglmlnv
vdptsidtvlatiraefgevdilvnnagitrdnllmrmkddewqdiidtnltsvfrlska
vmrammkkrfgriitigsgqvnyaaakagvigfskslarevasrgitvnvvapgfdakei
asavaflasdeasyisgetlhvngg

Timeline for d5cdyd_:

• d5cdyd_ first appeared in SCOPe 2.05
  
• d5cdyd_ appears in SCOPe 2.06
  
• d5cdyd_ appears in the current release, SCOPe 2.08