SCOPe 2.08: Domain d1gnmb_: 1gnm B:

Lineage for d1gnmb_ (1gnm B:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.50: Acid proteases [50629] (1 superfamily)
   barrel, closed; n=6, S=10, complex topology

4. Superfamily b.50.1: Acid proteases [50630] (4 families)

5. Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 proteins)
   dimer of identical mono-domain chains, each containing (6,10) barrel

6. Protein Human immunodeficiency virus type 1 protease [50632] (9 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [50633] (590 PDB entries)
   Uniprot P35963 57-155 ! Uniprot P04587 69-167 ! Uniprot P03366 69-167 ! Uniprot P03367 69-167 ! Uniprot P03368 69-167

8. Domain d1gnmb_: 1gnm B: [26673]
   complexed with u0e; mutant

Details for d1gnmb_

PDB Entry: 1gnm, 2.3 Å

PDB Description: hiv-1 protease mutant with val 82 replaced by asp (v82d) complexed with u89360e (inhibitor)

PDB Compounds: (B:) hiv-1 protease

SCOPe Domain Sequences for d1gnmb_:

Sequence; same for both SEQRES and ATOM records:

>d1gnmb_ b.50.1.1 (B:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
pqitlwqrplvtikiggqlkealldtgaddtvleemslpgrwkpkmiggiggfikvrqyd
qilieicghkaigtvlvgptpdniigrnlltqigctlnf

Timeline for d1gnmb_:

• d1gnmb_ first appeared (with stable ids) in SCOP 1.55
  
• d1gnmb_ appears in SCOPe 2.07