SCOPe 2.07: Domain d4kdia2: 4kdi A:107-185

Lineage for d4kdia2 (4kdi A:107-185)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.31: Cdc48 domain 2-like [54584] (1 superfamily)
   beta-alpha-beta(3); 2 layers: alpha/beta

4. Superfamily d.31.1: Cdc48 domain 2-like [54585] (2 families)

5. Family d.31.1.1: Cdc48 domain 2-like [54586] (4 proteins)

6. Protein Membrane fusion atpase p97 domain 2, P97-Nc [64254] (2 species)

7. Species Human (Homo sapiens) [TaxId:9606] [233318] (13 PDB entries)

8. Domain d4kdia2: 4kdi A:107-185 [266548]
   Other proteins in same PDB: d4kdia1, d4kdib1
   automated match to d1e32a3

Details for d4kdia2

PDB Entry: 4kdi, 1.86 Å

PDB Description: Crystal structure of p97/VCP N in complex with OTU1 UBXL

PDB Compounds: (A:) Transitional endoplasmic reticulum ATPase

SCOPe Domain Sequences for d4kdia2:

Sequence, based on SEQRES records:

>d4kdia2 d.31.1.1 (A:107-185) Membrane fusion atpase p97 domain 2, P97-Nc {Human (Homo sapiens) [TaxId: 9606]}
dvkygkrihvlpiddtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvv
etdpspycivapdtvihce

Sequence, based on observed residues (ATOM records):

>d4kdia2 d.31.1.1 (A:107-185) Membrane fusion atpase p97 domain 2, P97-Nc {Human (Homo sapiens) [TaxId: 9606]}
dvkygkrihvlpidnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspyc
ivapdtvihce

Timeline for d4kdia2:

• d4kdia2 first appeared in SCOPe 2.05
  
• d4kdia2 appears in SCOPe 2.06
  
• d4kdia2 appears in the current release, SCOPe 2.08