SCOPe 2.07: Domain d4p1yb1: 4p1y B:13-280

Lineage for d4p1yb1 (4p1y B:13-280)

1. Root: SCOPe 2.07

2. Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)

3. Fold f.6: Leukocidin-like [56958] (1 superfamily)
   subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel

4. Superfamily f.6.1: Leukocidin-like [56959] (3 families)

5. Family f.6.1.0: automated matches [227293] (1 protein)
   not a true family

6. Protein automated matches [227114] (6 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:158878] [259901] (2 PDB entries)

8. Domain d4p1yb1: 4p1y B:13-280 [259905]
   Other proteins in same PDB: d4p1ya_, d4p1yb2, d4p1yc_, d4p1yd2, d4p1ye_, d4p1yf2, d4p1yg_, d4p1yh2
   automated match to d4iyaa_

Details for d4p1yb1

PDB Entry: 4p1y, 2.99 Å

PDB Description: Crystal structure of staphylococcal gamma-hemolysin prepore

PDB Compounds: (B:) Gamma-hemolysin component A

SCOPe Domain Sequences for d4p1yb1:

Sequence, based on SEQRES records:

>d4p1yb1 f.6.1.0 (B:13-280) automated matches {Staphylococcus aureus [TaxId: 158878]}
iikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkkypyikrm
iwpfqynislktkdsnvdlinylpknkidsadvsqklgyniggnfqsapsiggsgsfnys
ktisynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardyfv
pdnqlppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrkhd
afknrnvtvkyevnwkthevkiksitpk

Sequence, based on observed residues (ATOM records):

>d4p1yb1 f.6.1.0 (B:13-280) automated matches {Staphylococcus aureus [TaxId: 158878]}
iikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkkypyikrm
iwpfqynislktkdsnvdlinylpknkidsadvsqklgynigsgsfnysktisynqknyv
tevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardyfvpdnqlppliqs
gfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrkhdafknrnvtvky
evnwkthevkiksitpk

Timeline for d4p1yb1:

• d4p1yb1 first appeared in SCOPe 2.04, called d4p1yb_
  
• d4p1yb1 appears in SCOPe 2.06
  
• d4p1yb1 appears in the current release, SCOPe 2.08