SCOPe 2.07: Domain d4pbra1: 4pbr A:1-306

Lineage for d4pbra1 (4pbr A:1-306)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (10 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:243232] [193079] (20 PDB entries)

8. Domain d4pbra1: 4pbr A:1-306 [258111]
   Other proteins in same PDB: d4pbra2
   automated match to d4ndaa_
   complexed with 2l7, gol, peg

Details for d4pbra1

PDB Entry: 4pbr, 1.9 Å

PDB Description: crystal structure of the m. jannaschii g2 trna synthetase variant bound to 4-(2-bromoisobutyramido)-phenylalanine (bibaf)

PDB Compounds: (A:) Tyrosine--tRNA ligase

SCOPe Domain Sequences for d4pbra1:

Sequence; same for both SEQRES and ATOM records:

>d4pbra1 c.26.1.1 (A:1-306) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
mdefemikrntseiiseeelrevlkkdeksagigfepsgkihlghylqikkmidlqnagf
diiieladlhaylnqkgeldeirkigdynkkvfeamglkakyvygsewmldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnsihykgvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikile
pirkrl

Timeline for d4pbra1:

• d4pbra1 first appeared in SCOPe 2.04, called d4pbra_
  
• d4pbra1 appears in SCOPe 2.06
  
• d4pbra1 appears in the current release, SCOPe 2.08