SCOPe 2.08: Domain d4m4rd1: 4m4r D:27-165

Lineage for d4m4rd1 (4m4r D:27-165)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.5: Ephrin ectodomain [74874] (3 proteins)
   eukaryotic signaling domain probably related to cupredoxins but lacking the metal-binding site
   automatically mapped to Pfam PF00812

6. Protein automated matches [190316] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187131] (6 PDB entries)

8. Domain d4m4rd1: 4m4r D:27-165 [253743]
   Other proteins in same PDB: d4m4rb2, d4m4rd2
   automated match to d1shxa_
   complexed with nag

Details for d4m4rd1

PDB Entry: 4m4r, 3.13 Å

PDB Description: epha4 ectodomain complex with ephrin a5

PDB Compounds: (D:) Ephrin-A5

SCOPe Domain Sequences for d4m4rd1:

Sequence; same for both SEQRES and ATOM records:

>d4m4rd1 b.6.1.5 (D:27-165) automated matches {Human (Homo sapiens) [TaxId: 9606]}
avadryavywnssnprfqrgdyhidvcindyldvfcphyedsvpedkteryvlymvnfdg
ysacdhtskgfkrwecnrphspngplkfsekfqlftpfslgfefrpgreyfyissaipdn
grrsclklkvfvrptnscm

Timeline for d4m4rd1:

• d4m4rd1 first appeared in SCOPe 2.04, called d4m4rd_
  
• d4m4rd1 appears in SCOPe 2.07