SCOPe 2.05: Domain d4gmda_: 4gmd A:

Lineage for d4gmda_ (4gmd A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.0: automated matches [191323] (1 protein)
   not a true family

6. Protein automated matches [190123] (96 species)
   not a true protein

7. Species Pseudomonas aeruginosa [TaxId:208964] [226294] (10 PDB entries)

8. Domain d4gmda_: 4gmd A: [252234]
   automated match to d3uwob_
   complexed with atm, ca, cl, gol

Details for d4gmda_

PDB Entry: 4gmd, 1.98 Å

PDB Description: The crystal structure of thymidylate kinase from Pseudomonas aeruginosa PAO1 in complex with AZT Monophosphate

PDB Compounds: (A:) thymidylate kinase

SCOPe Domain Sequences for d4gmda_:

Sequence, based on SEQRES records:

>d4gmda_ c.37.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpveiglaraaargrldrfeqedrrffeavrqtylqraaqapery
qvldaglplaevqagldrllpnllerln

Sequence, based on observed residues (ATOM records):

>d4gmda_ c.37.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpveigargrldrfeqedrrffeavrqtylqraaqaperyqvlda
glplaevqagldrllpnllerln

Timeline for d4gmda_:

• d4gmda_ first appeared in SCOPe 2.04
  
• d4gmda_ appears in SCOPe 2.06
  
• d4gmda_ appears in the current release, SCOPe 2.08