SCOPe 2.07: Domain d3ebjd1: 3ebj D:1-197

Lineage for d3ebjd1 (3ebj D:1-197)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (37 families)

5. Family c.52.1.34: PA N-terminal domain [254166] (2 proteins)
   Pfam PF00603; relationship to endonucleases discussed in PubMed 19194458

6. Protein PA N-terminal domain [254375] (7 species)

7. Species Influenza A virus [TaxId:93838] [254808] (91 PDB entries)

8. Domain d3ebjd1: 3ebj D:1-197 [245820]
   Other proteins in same PDB: d3ebja2, d3ebjb2, d3ebjc2, d3ebjd2
   complexed with mg

Details for d3ebjd1

PDB Entry: 3ebj, 2.2 Å

PDB Description: crystal structure of an avian influenza virus protein

PDB Compounds: (D:) Polymerase acidic protein

SCOPe Domain Sequences for d3ebjd1:

Sequence, based on SEQRES records:

>d3ebjd1 c.52.1.34 (D:1-197) PA N-terminal domain {Influenza A virus [TaxId: 93838]}
medfvrqcfnpmivelaekamkeygedpkietnkfaaicthlevcfmysdfhfiderges
tiiesgdpnallkhrfeiiegrdrtmawtvvnsicnttgvekpkflpdlydykenrfiei
gvtrrevhtyylekankiksekthihifsftgeematkadytldeesrariktrlftirq
emasrglwdsfrqserg

Sequence, based on observed residues (ATOM records):

>d3ebjd1 c.52.1.34 (D:1-197) PA N-terminal domain {Influenza A virus [TaxId: 93838]}
medfvrqcfnpmivelaekamkeygedpkietnkfaaicthlevcfmysrfeiiegrdrt
mawtvvnsicnttgvekpkflpdlydykenrfieigvtrrevhtyylekankiksekthi
hifsftgeematkadytldeesrariktrlftirqemasrglwdsfrqserg

Timeline for d3ebjd1:

• d3ebjd1 first appeared in SCOPe 2.04, called d3ebjd_
  
• d3ebjd1 appears in SCOPe 2.06
  
• d3ebjd1 appears in the current release, SCOPe 2.08