SCOPe 2.06: Domain d2yd0a4: 2yd0 A:615-940

Lineage for d2yd0a4 (2yd0 A:615-940)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.1: ARM repeat [48371] (26 families)

5. Family a.118.1.26: ERAP1 C-terminal-like [254170] (3 proteins)
   Pfam PF11838; PubMed 15893768
   this is a repeat family; one repeat unit is 2xdt A:843-881 found in domain

6. Protein ERAP1 C-terminal domain [254386] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [254819] (2 PDB entries)

8. Domain d2yd0a4: 2yd0 A:615-940 [244729]
   Other proteins in same PDB: d2yd0a1, d2yd0a2, d2yd0a3
   complexed with bes, edo, k, nag, zn

Details for d2yd0a4

PDB Entry: 2yd0, 2.7 Å

PDB Description: crystal structure of the soluble domain of human endoplasmic reticulum aminopeptidase 1 erap1

PDB Compounds: (A:) endoplasmic reticulum aminopeptidase 1

SCOPe Domain Sequences for d2yd0a4:

Sequence; same for both SEQRES and ATOM records:

>d2yd0a4 a.118.1.26 (A:615-940) ERAP1 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
dgwdsltgllkgthtavssndraslinnafqlvsigklsiekaldlslylkheteimpvf
qglnelipmyklmekrdmnevetqfkaflirllrdlidkqtwtdegsvsermlrsqllll
acvhnyqpcvqraegyfrkwkesngnlslpvdvtlavfavgaqstegwdflyskyqfsls
steksqiefalcrtqnkeklqwlldesfkgdkiktqefpqiltligrnpvgyplawqflr
knwnklvqkfelgsssiahmvmgttnqfstrtrleevkgffsslkengsqlrcvqqtiet
ieenigwmdknfdkirvwlqsekler

Timeline for d2yd0a4:

• d2yd0a4 first appeared in SCOPe 2.04
  
• d2yd0a4 appears in SCOPe 2.05
  
• d2yd0a4 appears in SCOPe 2.07
  
• d2yd0a4 appears in the current release, SCOPe 2.08