SCOPe 2.04: Domain d3spya2: 3spy A:376-901

Lineage for d3spya2 (3spy A:376-901)

1. Root: SCOPe 2.04

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (92 PDB entries)

8. Domain d3spya2: 3spy A:376-901 [233590]
   Other proteins in same PDB: d3spya1
   automated match to d1ih7a2
   protein/DNA complex; complexed with mg, upc

Details for d3spya2

PDB Entry: 3spy, 2.14 Å

PDB Description: rb69 dna polymerase(l415a/l561a/s565g/y567a) ternary complex with dupcpp opposite da

PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d3spya2:

Sequence; same for both SEQRES and ATOM records:

>d3spya2 e.8.1.1 (A:376-901) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsaypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkalinglagalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf

Timeline for d3spya2:

• d3spya2 first appeared in SCOPe 2.03
  
• d3spya2 appears in SCOPe 2.05
  
• d3spya2 appears in the current release, SCOPe 2.08