SCOPe 2.05: Domain d4lyda_: 4lyd A:

Lineage for d4lyda_ (4lyd A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.69: alpha/beta-Hydrolases [53473] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest

4. Superfamily c.69.1: alpha/beta-Hydrolases [53474] (42 families)
   many members have left-handed crossover connection between strand 8 and additional strand 9

5. Family c.69.1.0: automated matches [191404] (1 protein)
   not a true family

6. Protein automated matches [190543] (71 species)
   not a true protein

7. Species Sphingomonas wittichii [TaxId:392499] [227977] (5 PDB entries)

8. Domain d4lyda_: 4lyd A: [227980]
   automated match to d2rhwa_
   mutant

Details for d4lyda_

PDB Entry: 4lyd, 2.26 Å

PDB Description: crystal structure of the s105a mutant of a c-c hydrolase, dxnb2 from sphingomonas wittichii rw1

PDB Compounds: (A:) MCP Hydrolase

SCOPe Domain Sequences for d4lyda_:

Sequence, based on SEQRES records:

>d4lyda_ c.69.1.0 (A:) automated matches {Sphingomonas wittichii [TaxId: 392499]}
mfeqfeskfidcdgirthyiemgegdplvlvhgggagadgrsnfadnfpifarhmrviay
dmvgfgqtdapdpagfaytqaartdhlisfikalglskiclignamggttacgaalkape
lidrlvlmgaavnispddmvanrddlaavmsydgseegmrkiiaalthsyqptddivhyr
heaslrptttaaykatmgwakqnglyyspeqlasltmpvlvlggkndvmvpvrkvidqil
aipqaighvfpncghwvmieypeefctqtlhffgkl

Sequence, based on observed residues (ATOM records):

>d4lyda_ c.69.1.0 (A:) automated matches {Sphingomonas wittichii [TaxId: 392499]}
mfeqfeskfidcdgirthyiemgegdplvlvhgggagadgrsnfadnfpifarhmrviay
dmvgfgqtdapdpagfaytqaartdhlisfikalglskiclignamggttacgaalkape
lidrlvlmgaavnispddmvanrydgseegmrkiiaalthsyqptddivhyrheaslrpt
ttaaykatmgwakqnglyyspeqlasltmpvlvlggkndvmvpvrkvidqilaipqaigh
vfpncghwvmieypeefctqtlhffgkl

Timeline for d4lyda_:

• d4lyda_ first appeared in SCOPe 2.03
  
• d4lyda_ appears in SCOPe 2.04
  
• d4lyda_ appears in SCOPe 2.06
  
• d4lyda_ appears in the current release, SCOPe 2.08