Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1567876Superfamily c.1.5: Inosine monophosphate dehydrogenase (IMPDH) [51412] (2 families) (S)
    The phosphate moiety of substrate binds in the 'common' phosphate-binding site
  5. 1567918Family c.1.5.0: automated matches [227276] (1 protein)
    not a true family
  6. 1567919Protein automated matches [227084] (7 species)
    not a true protein

Species:

  1. 1567920Bacillus anthracis [TaxId:198094] [228249] (7 PDB entries)
    1. Domains for 4mjm:
      1. 1567923Domain d4mjma_: 4mjm A: [228251]
        automated match to d1eepa_
        complexed with edo
      2. 1567924Domain d4mjmb_: 4mjm B: [235652]
        automated match to d4mjma_
        complexed with edo
      3. 1567925Domain d4mjmc_: 4mjm C: [235653]
        automated match to d4mjma_
        complexed with edo
      4. 1567926Domain d4mjmd_: 4mjm D: [228250]
        automated match to d1eepa_
        complexed with edo
    2. Domains for 4mxs:
      1. 1567939Domain d4mxsa_: 4mxs A: [257114]
        automated match to d4my1c_
        complexed with 2eo, imp
      2. 1567940Domain d4mxsb_: 4mxs B: [257113]
        automated match to d4my1c_
        complexed with 2eo, imp
    3. Domains for 4my1:
      1. 1567931Domain d4my1a_: 4my1 A: [235695]
        automated match to d4mjmd_
        complexed with imp, p68
      2. 1567932Domain d4my1b_: 4my1 B: [240547]
        automated match to d4my1a_
        complexed with imp, p68
      3. 1567933Domain d4my1c_: 4my1 C: [240548]
        automated match to d4my1a_
        complexed with imp, p68
      4. 1567934Domain d4my1d_: 4my1 D: [240549]
        automated match to d4my1a_
        complexed with imp, p68
      5. 1567935Domain d4my1e_: 4my1 E: [240550]
        automated match to d4my1a_
        complexed with imp, p68
      6. 1567936Domain d4my1f_: 4my1 F: [240551]
        automated match to d4my1a_
        complexed with imp, p68
      7. 1567937Domain d4my1g_: 4my1 G: [240552]
        automated match to d4my1a_
        complexed with imp, p68
      8. 1567938Domain d4my1h_: 4my1 H: [240553]
        automated match to d4my1a_
        complexed with imp, p68
    4. Domains for 4my8:
      1. 1567927Domain d4my8a_: 4my8 A: [240554]
        automated match to d4my1a_
        complexed with acy, edo, fmt, imp, q21
      2. 1567928Domain d4my8b_: 4my8 B: [235698]
        automated match to d4mjmd_
        complexed with acy, edo, fmt, imp, q21
      3. 1567929Domain d4my8c_: 4my8 C: [240555]
        automated match to d4my1a_
        complexed with acy, edo, fmt, imp, q21
      4. 1567930Domain d4my8d_: 4my8 D: [240556]
        automated match to d4my1a_
        complexed with acy, edo, fmt, imp, q21
    5. Domains for 4mya:
      1. 1567921Domain d4myaa_: 4mya A: [253832]
        automated match to d4my1a_
        complexed with 2ey, gol, imp
      2. 1567922Domain d4myab_: 4mya B: [253833]
        automated match to d4my1a_
        complexed with 2ey, gol, imp
    6. Domain for 4myx:
    7. Domains for 4qm1:
      1. 1567941Domain d4qm1a_: 4qm1 A: [260237]
        automated match to d4my1c_
        complexed with 39h, imp
      2. 1567942Domain d4qm1c_: 4qm1 C: [260236]
        automated match to d4my1c_
        complexed with 39h, imp
  2. 1567944Campylobacter jejuni [TaxId:192222] [235705] (3 PDB entries)
    1. Domains for 4mz1:
      1. 1567946Domain d4mz1a_: 4mz1 A: [240557]
        automated match to d4mz1c_
        complexed with 2f1, acy, imp, k, po4, so4
      2. 1567947Domain d4mz1b_: 4mz1 B: [240558]
        automated match to d4mz1c_
        complexed with 2f1, acy, imp, k, po4, so4
      3. 1567948Domain d4mz1c_: 4mz1 C: [235706]
        automated match to d4mjmd_
        complexed with 2f1, acy, imp, k, po4, so4
    2. Domain for 4mz8:
      • 1567949Domain d4mz8c_: 4mz8 C: [257966]
        automated match to d4mz1a_
        complexed with 2f2, acy, c91, cl, edo, fmt, gol, imp, so4
    3. Domain for 4r7j:
  3. 1567950Clostridium perfringens [TaxId:195103] [258287] (1 PDB entry)
  4. 1567954Cryptosporidium parvum [TaxId:353152] [232705] (1 PDB entry)
  5. 1567963Cryptosporidium parvum [TaxId:5807] [234914] (3 PDB entries)
    1. Domain for 3ffs:
    2. Domains for 4ixh:
      1. 1567964Domain d4ixha_: 4ixh A: [234915]
        automated match to d4mjmd_
        complexed with edo, imp, q21
      2. 1567965Domain d4ixhb_: 4ixh B: [234916]
        automated match to d4mjmd_
        complexed with edo, imp, q21
      3. 1567966Domain d4ixhc_: 4ixh C: [234917]
        automated match to d4mjmd_
        complexed with edo, imp, q21
      4. 1567967Domain d4ixhd_: 4ixh D: [240273]
        automated match to d4ixha_
        complexed with edo, imp, q21
    3. Domains for 4qj1:
      1. 1567968Domain d4qj1a_: 4qj1 A: [258799]
        automated match to d4my1c_
        complexed with acy, edo, fmt, imp, n09
      2. 1567969Domain d4qj1b_: 4qj1 B: [258797]
        automated match to d4my1c_
        complexed with acy, edo, fmt, imp, n09
      3. 1567970Domain d4qj1c_: 4qj1 C: [258798]
        automated match to d4my1c_
        complexed with acy, edo, fmt, imp, n09
      4. 1567971Domain d4qj1d_: 4qj1 D: [258800]
        automated match to d4my1c_
        complexed with acy, edo, fmt, imp, n09
  6. 1567973Human (Homo sapiens) [TaxId:9606] [230557] (2 PDB entries)
    1. Domains for 2bzn:
      1. 1567982Domain d2bzna_: 2bzn A: [230558]
        automated match to d4mjma_
        complexed with imp
      2. 1567983Domain d2bznb_: 2bzn B: [230560]
        automated match to d4mjma_
        complexed with imp
      3. 1567984Domain d2bznc_: 2bzn C: [230561]
        automated match to d4mjma_
        complexed with imp
      4. 1567985Domain d2bznd_: 2bzn D: [230562]
        automated match to d4mjma_
        complexed with imp
      5. 1567986Domain d2bzne_: 2bzn E: [230563]
        automated match to d4mjma_
        complexed with imp
      6. 1567987Domain d2bznf_: 2bzn F: [230564]
        automated match to d4mjma_
        complexed with imp
      7. 1567988Domain d2bzng_: 2bzn G: [230565]
        automated match to d4mjma_
        complexed with imp
      8. 1567989Domain d2bznh_: 2bzn H: [230566]
        automated match to d4mjma_
        complexed with imp
    2. Domains for 2c6q:
      1. 1567974Domain d2c6qa_: 2c6q A: [241417]
        automated match to d2bzna_
        complexed with imp, ndp
      2. 1567975Domain d2c6qb_: 2c6q B: [241418]
        automated match to d2bznb_
        complexed with imp, ndp
      3. 1567976Domain d2c6qc_: 2c6q C: [241419]
        automated match to d2bzna_
        complexed with imp, ndp
      4. 1567977Domain d2c6qd_: 2c6q D: [241420]
        automated match to d2bzna_
        complexed with imp, ndp
      5. 1567978Domain d2c6qe_: 2c6q E: [241421]
        automated match to d2bzna_
        complexed with imp, ndp
      6. 1567979Domain d2c6qf_: 2c6q F: [241422]
        automated match to d2bzna_
        complexed with imp, ndp
      7. 1567980Domain d2c6qg_: 2c6q G: [241423]
        automated match to d2bznb_
        complexed with imp, ndp
      8. 1567981Domain d2c6qh_: 2c6q H: [241424]
        automated match to d2bzna_
        complexed with imp, ndp
  7. 1567990Vibrio cholerae [TaxId:243277] [226404] (1 PDB entry)

More info for Protein automated matches from c.1.5.0: automated matches

Timeline for Protein automated matches from c.1.5.0: automated matches: