SCOPe 2.08: Domain d4it0b_: 4it0 B:

Lineage for d4it0b_ (4it0 B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.261: Hypothetical protein PH1602 [103364] (1 superfamily)
   complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold

4. Superfamily d.261.1: Hypothetical protein PH1602 [103365] (2 families)

5. Family d.261.1.1: Hypothetical protein PH1602 [103366] (2 proteins)
   automatically mapped to Pfam PF01139

6. Protein Hypothetical protein PH1602 [103367] (1 species)

7. Species Pyrococcus horikoshii [TaxId:53953] [103368] (5 PDB entries)

8. Domain d4it0b_: 4it0 B: [223359]
   automated match to d1uc2a_
   protein/RNA complex; complexed with 5gp, mn, so4

Details for d4it0b_

PDB Entry: 4it0, 2.4 Å

PDB Description: structure of the rna ligase rtcb-gmp/mn(ii) complex

PDB Compounds: (B:) tRNA-splicing ligase RtcB

SCOPe Domain Sequences for d4it0b_:

Sequence; same for both SEQRES and ATOM records:

>d4it0b_ d.261.1.1 (B:) Hypothetical protein PH1602 {Pyrococcus horikoshii [TaxId: 53953]}
vvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykysi
vmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlvd
tlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadpe
avsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrglg
hqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmith
wvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppgh
eavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyrg
drirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvakg

Timeline for d4it0b_:

• d4it0b_ first appeared in SCOPe 2.03
  
• d4it0b_ appears in SCOPe 2.07