PDB entry 4it0

View 4it0 on RCSB PDB site
Description: Structure of the RNA ligase RtcB-GMP/Mn(II) complex
Class: ligase
Keywords: RNA Ligase, LIGASE
Deposited on 2013-01-17, released 2013-03-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA-splicing ligase RtcB
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1602, rtcB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4it0a_
  • Chain 'B':
    Compound: tRNA-splicing ligase RtcB
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1602, rtcB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4it0b_
  • Heterogens: MN, 5GP, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4it0A (A:)
mvvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykys
ivmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlv
dtlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadp
eavsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrgl
ghqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmit
hwvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppg
heavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyr
gdrirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvak
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4it0A (A:)
vvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykysi
vmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlvd
tlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadpe
avsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrglg
hqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmith
wvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppgh
eavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyrg
drirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvakg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4it0B (B:)
mvvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykys
ivmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlv
dtlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadp
eavsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrgl
ghqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmit
hwvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppg
heavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyr
gdrirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvak
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4it0B (B:)
vvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykysi
vmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlvd
tlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadpe
avsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrglg
hqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmith
wvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppgh
eavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyrg
drirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvakg