Lineage for d1g9ml1 (1g9m L:1-109)
- Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds) 
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families) 
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins) 
Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (31 PDB entries) 
Domain d1g9ml1: 1g9m L:1-109 [20262]
Other proteins in same PDB: d1g9mc1, d1g9mc2, d1g9mg_, d1g9mh1, d1g9mh2, d1g9ml2
part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
complexed with fuc, ipa, nag, ndg
Details for d1g9ml1
PDB Entry: 1g9m (more details), 2.2 Å
PDB Description: hiv-1 hxbc2 gp120 envelope glycoprotein complexed with cd4 and induced neutralizing antibody 17b
PDB Compounds: (L:) antibody 17b, light chainSCOPe Domain Sequences for d1g9ml1:
Sequence; same for both SEQRES and ATOM records: (download)
>d1g9ml1 b.1.1.1 (L:1-109) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}
eleltqspatlsvspgeratlscrasesvssdlawyqqkpgqaprlliygastratgvpa
rfsgsgsgaeftltisslqsedfavyycqqynnwpprytfgqgtrleik
SCOPe Domain Coordinates for d1g9ml1:
Click to download the PDB-style file with coordinates for d1g9ml1.
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(The format of our PDB-style files is described here.)
Timeline for d1g9ml1:
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