SCOPe 2.01: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.01
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.4: His-Me finger endonucleases [54059] (1 superfamily)
core: (alpha)-beta-omega_loop-beta-alpha; embeded in larger different structures
Superfamily d.4.1: His-Me finger endonucleases [54060] (6 families)
common motif contains conserved histidine residue and metal-binding site
Family d.4.1.1: HNH-motif [54061] (3 proteins)
Protein automated matches [190311] (1 species)
not a true protein

Species:

Escherichia coli [TaxId:562] [187878] (8 PDB entries)
1. Domain for 2ivh:
  - Domain d2ivha_: 2ivh A: [165708]
    automated match to d1m08a_
    protein/DNA complex; complexed with zn; mutant
2. Domain for 2vlo:
  - Domain d2vlob_: 2vlo B: [161581]
    Other proteins in same PDB: d2vloa_
    automated match to d1fsjb_
    protein/DNA complex; complexed with so4; mutant
3. Domain for 2vlp:
  - Domain d2vlpb_: 2vlp B: [161582]
    Other proteins in same PDB: d2vlpa_
    automated match to d1fsjb_
    protein/DNA complex; complexed with mla; mutant
4. Domain for 2vlq:
  - Domain d2vlqb_: 2vlq B: [161583]
    Other proteins in same PDB: d2vlqa_
    automated match to d1fsjb_
    protein/DNA complex; complexed with mla; mutant
5. Domain for 2wpt:
  - Domain d2wptb_: 2wpt B: [169555]
    Other proteins in same PDB: d2wpta_
    automated match to d1fsjb_
    protein/DNA complex; complexed with gol, no3
6. Domains for 3fbd:
  1. Domain d3fbda_: 3fbd A: [175649]
    automated match to d1mz8b_
    protein/DNA complex; mutant
  2. Domain d3fbdd_: 3fbd D: [175650]
    automated match to d1mz8b_
    protein/DNA complex; mutant
7. Domains for 3gjn:
  1. Domain d3gjnb_: 3gjn B: [176706]
    Other proteins in same PDB: d3gjna_, d3gjnd_
    automated match to d1mz8b_
    complexed with zn
  2. Domain d3gjnc_: 3gjn C: [176707]
    Other proteins in same PDB: d3gjna_, d3gjnd_
    automated match to d1mz8b_
    complexed with zn
8. Domains for 3gkl:
  1. Domain d3gkla_: 3gkl A: [176721]
    Other proteins in same PDB: d3gklc_, d3gkld_
    automated match to d1mz8b_
    complexed with zn
  2. Domain d3gklb_: 3gkl B: [176722]
    Other proteins in same PDB: d3gklc_, d3gkld_
    automated match to d1mz8b_
    complexed with zn

More info for Protein automated matches from d.4.1.1: HNH-motif

Timeline for Protein automated matches from d.4.1.1: HNH-motif:

Protein automated matches from d.4.1.1: HNH-motif is new in SCOPe 2.01-stable
Protein automated matches from d.4.1.1: HNH-motif appears in SCOPe 2.02
Protein automated matches from d.4.1.1: HNH-motif appears in the current release, SCOPe 2.08