SCOPe 2.08: Domain d3ubek1: 3ube K:11-325

Lineage for d3ubek1 (3ube K:11-325)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (22 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (131 PDB entries)

8. Domain d3ubek1: 3ube K:11-325 [186203]
   Other proteins in same PDB: d3ubeb_, d3ubed_, d3ubef_, d3ubeh_, d3ubej_, d3ubek2, d3ubel_
   automated match to d1ruyh_
   complexed with nag, sia

Details for d3ubek1

PDB Entry: 3ube, 2.15 Å

PDB Description: influenza hemagglutinin from the 2009 pandemic in complex with ligand lstc

PDB Compounds: (K:) hemagglutinin HA1

SCOPe Domain Sequences for d3ubek1:

Sequence, based on SEQRES records:

>d3ubek1 b.19.1.2 (K:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnips

Sequence, based on observed residues (ATOM records):

>d3ubek1 b.19.1.2 (K:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpecasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktsswpn
hdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhpsts
adqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitfeat
gnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigkcpk
yvkstklrlatglrnips

Timeline for d3ubek1:

• d3ubek1 first appeared in SCOPe 2.01, called d3ubek_
  
• d3ubek1 appears in SCOPe 2.07