Lineage for d3ogod_ (3ogo D:)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2184480Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 2184481Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 2184482Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)
  6. 2184486Protein Green fluorescent protein, GFP [54513] (4 species)
  7. 2184492Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (177 PDB entries)
    Uniprot P42212
  8. 2184708Domain d3ogod_: 3ogo D: [183014]
    Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
    automated match to d1qyoa_
    complexed with ipa

Details for d3ogod_

PDB Entry: 3ogo (more details), 2.8 Å

PDB Description: structure of the gfp:gfp-nanobody complex at 2.8 a resolution in spacegroup p21212
PDB Compounds: (D:) Green fluorescent protein

SCOPe Domain Sequences for d3ogod_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3ogod_ d.22.1.1 (D:) Green fluorescent protein, GFP {Jellyfish (Aequorea victoria) [TaxId: 6100]}
kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
tlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnr
ielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladhy
qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagit

SCOPe Domain Coordinates for d3ogod_:

Click to download the PDB-style file with coordinates for d3ogod_.
(The format of our PDB-style files is described here.)

Timeline for d3ogod_: