SCOPe 2.06: Domain d2y28c_: 2y28 C:

Lineage for d2y28c_ (2y28 C:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.118: N-acetylmuramoyl-L-alanine amidase-like [55845] (1 superfamily)
   contains mixed beta-sheet

4. Superfamily d.118.1: N-acetylmuramoyl-L-alanine amidase-like [55846] (2 families)

5. Family d.118.1.1: N-acetylmuramoyl-L-alanine amidase-like [55847] (11 proteins)
   Family 2 zinc amidase;

6. Protein AmpD protein [82775] (1 species)

7. Species Citrobacter freundii [TaxId:546] [82776] (7 PDB entries)

8. Domain d2y28c_: 2y28 C: [170537]
   automated match to d1j3ga_
   complexed with zn

Details for d2y28c_

PDB Entry: 2y28, 1.8 Å

PDB Description: crystal structure of Se-Met AmpD derivative

PDB Compounds: (C:) 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd

SCOPe Domain Sequences for d2y28c_:

Sequence; same for both SEQRES and ATOM records:

>d2y28c_ d.118.1.1 (C:) AmpD protein {Citrobacter freundii [TaxId: 546]}
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvt

Timeline for d2y28c_:

• d2y28c_ first appeared in SCOPe 2.01
  
• d2y28c_ appears in SCOPe 2.05
  
• d2y28c_ appears in SCOPe 2.07
  
• d2y28c_ appears in the current release, SCOPe 2.08