SCOPe 2.07: Domain d2vxmd_: 2vxm D:

Lineage for d2vxmd_ (2vxm D:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.9: alpha-1,3-galactosyltransferase-like [64131] (4 proteins)
   automatically mapped to Pfam PF03414

6. Protein automated matches [190178] (2 species)
   not a true protein

7. Species Cow (Bos taurus) [TaxId:9913] [188618] (2 PDB entries)

8. Domain d2vxmd_: 2vxm D: [168921]
   automated match to d1fg5n_
   complexed with gol, mpd; mutant

Details for d2vxmd_

PDB Entry: 2vxm, 2.82 Å

PDB Description: screening a limited structure-based library identifies udp-galnac- specific mutants of alpha-1,3 galactosyltransferase

PDB Compounds: (D:) n-acetyllactosaminide alpha-1,3-galactosyltransferase

SCOPe Domain Sequences for d2vxmd_:

Sequence, based on SEQRES records:

>d2vxmd_ c.68.1.9 (D:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
klklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryie
hyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismm
rmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftye
rrkesaayipfgegdfyyraaifggtptqvlnitqecfkgilkdkkndieaqwhdeshln
kyfllnkptkilspeycwdyhiglpad

Sequence, based on observed residues (ATOM records):

>d2vxmd_ c.68.1.9 (D:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
klklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryie
hyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpismmrmktig
ehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftyerrkesa
ayipfgegdfyyraaifggtptqvlnitqecfkgilkdkkndieaqwhdeshlnkyflln
kptkilspeycdyhiglpad

Timeline for d2vxmd_:

• d2vxmd_ first appeared in SCOPe 2.01
  
• d2vxmd_ appears in SCOPe 2.06
  
• d2vxmd_ appears in the current release, SCOPe 2.08