SCOPe 2.04: Protein: Exoribonuclease 2, RNB

Lineage for Protein: Exoribonuclease 2, RNB

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.40: OB-fold [50198] (16 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families)
Family b.40.4.5: Cold shock DNA-binding domain-like [50282] (31 proteins)
barrel, closed; n=5, S=8
Protein Exoribonuclease 2, RNB [159089] (1 species)
RNase II; contains 3 S1-like domains in addition to an OB-fold embedded in the catalytic domain

Species:

Escherichia coli [TaxId:562] [159090] (3 PDB entries)
Uniprot P30850 1-82! Uniprot P30850 4-82! Uniprot P30850 5-82! Uniprot P30850 558-643! Uniprot P30850 558-644! Uniprot P30850 83-172
1. Domains for 2id0:
  1. Domain d2id0a1: 2id0 A:558-644 [147606]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    complexed with mn
  2. Domain d2id0a2: 2id0 A:83-172 [147607]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    complexed with mn
  3. Domain d2id0a3: 2id0 A:5-82 [147608]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    complexed with mn
  4. Domain d2id0b1: 2id0 B:558-644 [147610]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a1
    complexed with mn
  5. Domain d2id0b2: 2id0 B:83-172 [147611]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a2
    complexed with mn
  6. Domain d2id0b3: 2id0 B:5-82 [147612]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a3
    complexed with mn
  7. Domain d2id0c1: 2id0 C:558-644 [147614]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a1
    complexed with mn
  8. Domain d2id0c2: 2id0 C:83-172 [147615]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a2
    complexed with mn
  9. Domain d2id0c3: 2id0 C:5-82 [147616]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a3
    complexed with mn
  10. Domain d2id0d1: 2id0 D:558-644 [147618]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a1
    complexed with mn
  11. Domain d2id0d2: 2id0 D:83-172 [147619]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a2
    complexed with mn
  12. Domain d2id0d3: 2id0 D:5-82 [147620]
    Other proteins in same PDB: d2id0a4, d2id0b4, d2id0c4, d2id0d4
    automated match to d2id0a3
    complexed with mn
2. Domains for 2ix0:
  1. Domain d2ix0a1: 2ix0 A:83-172 [147818]
    Other proteins in same PDB: d2ix0a4
    complexed with c5p, ca, mg
  2. Domain d2ix0a2: 2ix0 A:4-82 [147819]
    Other proteins in same PDB: d2ix0a4
    complexed with c5p, ca, mg
  3. Domain d2ix0a3: 2ix0 A:558-644 [147820]
    Other proteins in same PDB: d2ix0a4
    complexed with c5p, ca, mg
3. Domains for 2ix1:
  1. Domain d2ix1a1: 2ix1 A:83-172 [147822]
    Other proteins in same PDB: d2ix1a4
    complexed with mg; mutant
  2. Domain d2ix1a2: 2ix1 A:558-643 [147823]
    Other proteins in same PDB: d2ix1a4
    complexed with mg; mutant
  3. Domain d2ix1a3: 2ix1 A:1-82 [147824]
    Other proteins in same PDB: d2ix1a4
    complexed with mg; mutant

More info for Protein Exoribonuclease 2, RNB from b.40.4.5: Cold shock DNA-binding domain-like

Timeline for Protein Exoribonuclease 2, RNB from b.40.4.5: Cold shock DNA-binding domain-like:

Protein Exoribonuclease 2, RNB from b.40.4.5: Cold shock DNA-binding domain-like first appeared in SCOP 1.75
Protein Exoribonuclease 2, RNB from b.40.4.5: Cold shock DNA-binding domain-like appears in SCOPe 2.03
Protein Exoribonuclease 2, RNB from b.40.4.5: Cold shock DNA-binding domain-like appears in SCOPe 2.05
Protein Exoribonuclease 2, RNB from b.40.4.5: Cold shock DNA-binding domain-like last appears in SCOPe 2.07