SCOPe 2.08: Domain d3dswb_: 3dsw B:

Lineage for d3dswb_ (3dsw B:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

4. Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (5 families)

5. Family a.102.4.3: Protein prenyltransferases [48246] (3 proteins)

6. Protein Rab geranylgeranyltransferase, beta subunit [48249] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [48250] (21 PDB entries)

8. Domain d3dswb_: 3dsw B: [157845]
   automated match to d1dceb_
   complexed with ca, ger, zn

Details for d3dswb_

PDB Entry: 3dsw, 2.15 Å

PDB Description: crystal structure of rabggtase(delta lrr; delta ig)in complex with mono-prenylated peptide ser-cys(gg)-ser-cys derivated from rab7

PDB Compounds: (B:) Geranylgeranyl transferase type-2 subunit beta

SCOPe Domain Sequences for d3dswb_:

Sequence, based on SEQRES records:

>d3dswb_ a.102.4.3 (B:) Rab geranylgeranyltransferase, beta subunit {Norway rat (Rattus norvegicus) [TaxId: 10116]}
qkdvtiksdapdtlllekhadyiasygskkddyeycmseylrmsgvywgltvmdlmgqlh
rmnkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvq
slqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcr
pgseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcysww
vlaslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgee
qikpvspvfcmpeevlqrvnvqpelv

Sequence, based on observed residues (ATOM records):

>d3dswb_ a.102.4.3 (B:) Rab geranylgeranyltransferase, beta subunit {Norway rat (Rattus norvegicus) [TaxId: 10116]}
qkdvtiksdapdtlllekhadyiasygskddyeycmseylrmsgvywgltvmdlmgqlhr
mnkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvqs
lqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcrp
gseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcyswwv
laslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgeeq
ikpvspvfcmpeevlqrvnvqpelv

Timeline for d3dswb_:

• d3dswb_ first appeared in SCOP 1.75, called d3dswb1
  
• d3dswb_ appears in SCOPe 2.07