Lineage for d3cfjf1 (3cfj F:1-113)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2017500Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (33 PDB entries)
    Uniprot Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3)
  8. 2017521Domain d3cfjf1: 3cfj F:1-113 [156575]
    Other proteins in same PDB: d3cfja1, d3cfja2, d3cfjb2, d3cfjc1, d3cfjc2, d3cfjd2, d3cfje1, d3cfje2, d3cfjf2, d3cfjh2, d3cfjl1, d3cfjl2
    automatically matched to d1aqkh1
    complexed with gol, so4

Details for d3cfjf1

PDB Entry: 3cfj (more details), 2.6 Å

PDB Description: Crystal structure of catalytic elimination antibody 34E4, orthorhombic crystal form
PDB Compounds: (F:) Catalytic Antibody Fab 34E4 Heavy chain

SCOPe Domain Sequences for d3cfjf1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3cfjf1 b.1.1.1 (F:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

SCOPe Domain Coordinates for d3cfjf1:

Click to download the PDB-style file with coordinates for d3cfjf1.
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Timeline for d3cfjf1: