Lineage for d2z4lv1 (2z4l V:1-94)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2394256Fold b.53: Ribosomal protein L25-like [50714] (1 superfamily)
    barrel, closed; n=6, S=10; complex topology
  4. 2394257Superfamily b.53.1: Ribosomal protein L25-like [50715] (3 families) (S)
  5. 2394258Family b.53.1.1: Ribosomal protein L25-like [50716] (2 protein domains)
  6. 2394259Protein Ribosomal protein L25 [50717] (1 species)
  7. 2394260Species Escherichia coli [TaxId:562] [50718] (32 PDB entries)
  8. 2394287Domain d2z4lv1: 2z4l V:1-94 [154100]
    Other proteins in same PDB: d2z4l01, d2z4l11, d2z4l31, d2z4l41, d2z4l61, d2z4lc1, d2z4lc2, d2z4ld1, d2z4le1, d2z4lf1, d2z4lg1, d2z4lg2, d2z4lh1, d2z4lh2, d2z4li1, d2z4li2, d2z4lj1, d2z4lk1, d2z4ll1, d2z4lm1, d2z4ln1, d2z4lo1, d2z4lp1, d2z4lq1, d2z4lr1, d2z4ls1, d2z4lt1, d2z4lu1, d2z4lw1, d2z4lx1, d2z4ly1, d2z4lz1
    protein/RNA complex; complexed with mg, par, zn
    protein/RNA complex; complexed with mg, par, zn

Details for d2z4lv1

PDB Entry: 2z4l (more details), 4.45 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). This file contains the 50S subunit of the first 70S ribosome, with paromomycin and RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
PDB Compounds: (V:) 50S ribosomal protein L25

SCOPe Domain Sequences for d2z4lv1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2z4lv1 b.53.1.1 (V:1-94) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
ltivvdgkeikvkaqdvqrhpykpklqhidfvra

SCOPe Domain Coordinates for d2z4lv1:

Click to download the PDB-style file with coordinates for d2z4lv1.
(The format of our PDB-style files is described here.)

Timeline for d2z4lv1: