SCOPe 2.01: Domain d2vkdc_: 2vkd C:

Lineage for d2vkdc_ (2vkd C:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
   contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488

6. Protein Cytotoxin L [159727] (1 species)

7. Species Clostridium sordellii [TaxId:1505] [159728] (1 PDB entry)
   Uniprot Q46342 1-542

8. Domain d2vkdc_: 2vkd C: [153220]
   Other proteins in same PDB: d2vkdb_
   automated match to d2vkda1
   complexed with mn, upg

Details for d2vkdc_

PDB Entry: 2vkd, 2.53 Å

PDB Description: crystal structure of the catalytic domain of lethal toxin from clostridium sordellii in complex with udp-glc and manganese ion

PDB Compounds: (C:) cytotoxin l

SCOPe Domain Sequences for d2vkdc_:

Sequence; same for both SEQRES and ATOM records:

>d2vkdc_ c.68.1.22 (C:) Cytotoxin L {Clostridium sordellii [TaxId: 1505]}
mnlvnkaqlqkmayvkfriqedeyvailnaleeyhnmsessvvekylklkdinnltdnyl
ntykksgrnkalkkfkeyltmevlelknnsltpveknlhfiwiggqindtainyinqwkd
vnsdytvkvfydsnaflintlkktivesatnntlesfrenlndpefdynkfyrkrmeiiy
dkqkhfidyyksqieenpefiidniiktylsneyskdlealnkyieeslnkitanngndi
rnlekfadedlvrlynqelverwnlaaasdilrismlkedggvyldvdmlpgiqpdlfks
inkpdsitntswemikleaimkykeyipgytsknfdmldeevqrsfesalssksdkseif
lplddikvsplevkiafannsvinqalislkdsycsdlvinqiknrykilndnlnpsine
gtdfnttmkifsdklasisnednmmfmikitnylkvgfapdvrstinlsgpgvytgayqd
llmfkdnstnihllepelrnfefpktkisqlteqeitslwsfnqaraksqfeeykkgyfe
g

Timeline for d2vkdc_:

• d2vkdc_ first appeared in SCOP 1.75, called d2vkdc1
  
• d2vkdc_ appears in SCOPe 2.02
  
• d2vkdc_ appears in the current release, SCOPe 2.08