SCOPe 2.08: Domain d2qamo1: 2qam O:2-117

Lineage for d2qamo1 (2qam O:2-117)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.4: Translational machinery components [53137] (3 families)

5. Family c.55.4.1: Ribosomal protein L18 and S11 [53138] (2 proteins)

6. Protein Ribosomal protein L18 (L18p) [53139] (5 species)

7. Species Escherichia coli [TaxId:562] [159642] (29 PDB entries)
   Uniprot P0C018 1-117

8. Domain d2qamo1: 2qam O:2-117 [150255]
   Other proteins in same PDB: d2qam01, d2qam11, d2qam21, d2qam31, d2qam41, d2qamc1, d2qamc2, d2qamd1, d2qame1, d2qamf1, d2qamg1, d2qamg2, d2qamh1, d2qamh2, d2qami1, d2qami2, d2qamj1, d2qamk1, d2qaml1, d2qamm1, d2qamn1, d2qamp1, d2qamq1, d2qamr1, d2qams1, d2qamt1, d2qamu1, d2qamv1, d2qamw1, d2qamx1, d2qamy1, d2qamz1
   protein/RNA complex; complexed with mg, nmy, zn
   protein/RNA complex; complexed with mg, nmy, zn
   has additional insertions and/or extensions that are not grouped together

Details for d2qamo1

PDB Entry: 2qam, 3.21 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 50S subunit of the first 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

PDB Compounds: (O:) 50S ribosomal protein L18

SCOPe Domain Sequences for d2qamo1:

Sequence; same for both SEQRES and ATOM records:

>d2qamo1 c.55.4.1 (O:2-117) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}
dkksarirratrarrklqelgatrlvvhrtprhiyaqviapngsevlvaastvekaiaeq
lkytgnkdaaaavgkavaeralekgikdvsfdrsgfqyhgrvqaladaareaglqf

Timeline for d2qamo1:

• d2qamo1 first appeared in SCOP 1.75
  
• d2qamo1 appears in SCOPe 2.07