SCOPe 2.02: Domain d2orja1: 2orj A:236-355

Lineage for d2orja1 (2orj A:236-355)

1. Root: SCOPe 2.02

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.169: C-type lectin-like [56435] (1 superfamily)
   unusual fold

4. Superfamily d.169.1: C-type lectin-like [56436] (9 families)

5. Family d.169.1.1: C-type lectin domain [56437] (29 proteins)
   Pfam PF00059

6. Protein Surfactant protein, lectin domain [56461] (2 species)

7. Species Human (Homo sapiens), SP-D [TaxId:9606] [56462] (14 PDB entries)

8. Domain d2orja1: 2orj A:236-355 [139261]
   Other proteins in same PDB: d2orja2, d2orjb2, d2orjc2
   automatically matched to d1b08a1
   complexed with bm3, ca

Details for d2orja1

PDB Entry: 2orj, 1.8 Å

PDB Description: crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein d in complex with n-acetyl mannosamine

PDB Compounds: (A:) Pulmonary surfactant-associated protein D

SCOPe Domain Sequences for d2orja1:

Sequence; same for both SEQRES and ATOM records:

>d2orja1 d.169.1.1 (A:236-355) Surfactant protein, lectin domain {Human (Homo sapiens), SP-D [TaxId: 9606]}
ngqsvgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsm
tdsktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

Timeline for d2orja1:

• d2orja1 first appeared in SCOP 1.73
  
• d2orja1 appears in SCOPe 2.01
  
• d2orja1 appears in SCOPe 2.03
  
• d2orja1 appears in the current release, SCOPe 2.08