SCOPe 2.05: Domain d2gp4b2: 2gp4 B:0-418

Lineage for d2gp4b2 (2gp4 B:0-418)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.334: IlvD/EDD N-terminal domain-like [143974] (1 superfamily)
   contains a large cluster of helices and a mixed beta-sheet of 4 strands; order 2134, strands 3 and 4 are parallel

4. Superfamily d.334.1: IlvD/EDD N-terminal domain-like [143975] (1 family)

5. Family d.334.1.1: lvD/EDD N-terminal domain-like [143976] (1 protein)
   N-terminal part of Pfam PF00920

6. Protein 6-phosphogluconate dehydratase EDD [143977] (1 species)

7. Species Shewanella oneidensis [TaxId:70863] [143978] (1 PDB entry)
   Uniprot Q8EEA0 1-418

8. Domain d2gp4b2: 2gp4 B:0-418 [135451]
   Other proteins in same PDB: d2gp4a1, d2gp4b1
   automated match to d2gp4a2

Details for d2gp4b2

PDB Entry: 2gp4, 2.49 Å

PDB Description: Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis

PDB Compounds: (B:) 6-phosphogluconate dehydratase

SCOPe Domain Sequences for d2gp4b2:

Sequence, based on SEQRES records:

>d2gp4b2 d.334.1.1 (B:0-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}
hmhsvvqsvtdriiarskasreaylaalndarnhgvhrsslscgnlahgfaacnpddkna
lrqltkanigiitafndmlsahqpyetypdllkkacqevgsvaqvaggvpamcdgvtqgq
pgmelsllsreviamatavglshnmfdgalllgicdkivpglligalsfghlpmlfvpag
pmksgipnkekarirqqfaqgkvdraqlleaeaqsyhsagtctfygtansnqlmlevmgl
qlpgssfvnpddplrealnkmaakqvcrltelgtqyspigevvneksivngivallatgg
stnltmhivaaaraagiivnwddfselsdavpllarvypnghadinhfhaaggmaflike
lldagllhedvntvagyglrrytqepklldgelrwvdgptvsldtevltsvatpfqnng

Sequence, based on observed residues (ATOM records):

>d2gp4b2 d.334.1.1 (B:0-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}
hmhsvvqsvtdriiarskasreaylaalndarnhkacqevgsvaqvavpcdgvtqgqpgm
elsllsreviamatavglshnmfdgalllgickivpglligalsfghlpmlfvpagpqlm
levmglqlpgssfvnpddplrealnkmaakqvcrltelgtqyspigevvneksivngiva
llatggstnltmhivaaaraagiivnwddfselsdavpllarvypnghadinhfhaaggm
aflikelldagllhedvntvagyglrrytqepklldgelrwvdgptvsldtevltsvatp
fqnng

Timeline for d2gp4b2:

• d2gp4b2 first appeared in SCOP 1.73
  
• d2gp4b2 appears in SCOPe 2.04
  
• d2gp4b2 appears in SCOPe 2.06
  
• d2gp4b2 appears in the current release, SCOPe 2.08