Lineage for d2dw5a2 (2dw5 A:4-112)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2036241Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 2036242Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. 2037674Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
    probably related to cupredoxins but lacking the metal-binding site
    automatically mapped to Pfam PF08526
  6. 2037675Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)
  7. 2037676Species Human (Homo sapiens) [TaxId:9606] [110109] (16 PDB entries)
    Uniprot Q9UM07
  8. 2037681Domain d2dw5a2: 2dw5 A:4-112 [131806]
    Other proteins in same PDB: d2dw5a1, d2dw5a3
    automated match to d2dexx2
    complexed with bfb, ca, so4

Details for d2dw5a2

PDB Entry: 2dw5 (more details), 2.3 Å

PDB Description: Crystal structure of human peptidylarginine deiminase 4 in complex with N-alpha-benzoyl-N5-(2-fluoro-1-iminoethyl)-L-ornithine amide
PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d2dw5a2:

Sequence, based on SEQRES records: (download)

>d2dw5a2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkkst
gsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records): (download)

>d2dw5a2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapetsfsinaspgvvvditwpldpgvevtlt
mkaasgstgdqkvqisyygpktppvkallylta

SCOPe Domain Coordinates for d2dw5a2:

Click to download the PDB-style file with coordinates for d2dw5a2.
(The format of our PDB-style files is described here.)

Timeline for d2dw5a2: