SCOPe 2.04: Domain d2dkgb1: 2dkg B:189-235

Lineage for d2dkgb1 (2dkg B:189-235)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.1: C-terminal domain of transcriptional repressors [50037] (4 families)
   the N-terminal domains of these repressors bind DNA

5. Family b.34.1.1: Biotin repressor (BirA) [50038] (2 proteins)
   automatically mapped to Pfam PF02237

6. Protein Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain [141186] (1 species)

7. Species Pyrococcus horikoshii [TaxId:53953] [141187] (26 PDB entries)
   Uniprot O57883 189-235

8. Domain d2dkgb1: 2dkg B:189-235 [131553]
   Other proteins in same PDB: d2dkga2, d2dkgb2
   automated match to d1wnla1
   complexed with bt5, mg, pop

Details for d2dkgb1

PDB Entry: 2dkg, 2 Å

PDB Description: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mg(2+)

PDB Compounds: (B:) 235aa long hypothetical biotin-[acetyl-CoA-carboxylase] ligase

SCOPe Domain Sequences for d2dkgb1:

Sequence; same for both SEQRES and ATOM records:

>d2dkgb1 b.34.1.1 (B:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
gvrvkilgdgsfegiaediddfgrliirldsgevkkviygdvslrfl

Timeline for d2dkgb1:

• d2dkgb1 first appeared in SCOP 1.73
  
• d2dkgb1 appears in SCOPe 2.03
  
• d2dkgb1 appears in SCOPe 2.05
  
• d2dkgb1 appears in the current release, SCOPe 2.08