SCOPe 2.08: Domain d2df4a1: 2df4 A:1-485

Lineage for d2df4a1 (2df4 A:1-485)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.117: Amidase signature (AS) enzymes [75303] (1 superfamily)
   possible duplication: the topologies of N- and C-terminal halves are similar; 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213549A867 (A=10); strands from 5 to 9 are antiparallel to the rest

4. Superfamily c.117.1: Amidase signature (AS) enzymes [75304] (1 family)
   automatically mapped to Pfam PF01425

5. Family c.117.1.1: Amidase signature (AS) enzymes [75305] (5 proteins)

6. Protein Glutamyl-tRNA(Gln) amidotransferase subunit A [142738] (3 species)

7. Species Staphylococcus aureus [TaxId:1280] [142739] (5 PDB entries)
   Uniprot P63488 1-485

8. Domain d2df4a1: 2df4 A:1-485 [131445]
   Other proteins in same PDB: d2df4b1, d2df4b2, d2df4c1
   protein/RNA complex; complexed with mn

Details for d2df4a1

PDB Entry: 2df4, 3.2 Å

PDB Description: Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+

PDB Compounds: (A:) Glutamyl-tRNA(Gln) amidotransferase subunit A

SCOPe Domain Sequences for d2df4a1:

Sequence; same for both SEQRES and ATOM records:

>d2df4a1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}
msiryesvenlltlikdkkikpsdvvkdiydaieetdptiksflaldkenaikkaqelde
lqakdqmdgklfgipmgikdniitnglettcaskmlegfvpiyestvmeklhkenavlig
klnmdefamggstetsyfkktvnpfdhkavpggssggsaaavaaglvplslgsdtggsir
qpaaycgvvgmkptygrvsrfglvafassldqigpltrnvkdnaivleaisgadvndsts
apvddvdftseigkdikglkvalpkeylgegvaddvkeavqnavetlkslgavveevslp
ntkfgipsyyviasseassnlsrfdgirygyhskeahsleelykmsrsegfgkevkrrif
lgtfalssgyydayykksqkvrtlikndfdkvfenydvvvgptapttafnlgeeiddplt
myandllttpvnlaglpgisvpcgqsngrpiglqfigkpfdektlyrvayqyetqynlhd
vyekl

Timeline for d2df4a1:

• d2df4a1 first appeared in SCOP 1.73
  
• d2df4a1 appears in SCOPe 2.07