SCOPe 2.06: Domain d1yp3d2: 1yp3 D:13-316

Lineage for d1yp3d2 (1yp3 D:13-316)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.6: glucose-1-phosphate thymidylyltransferase [53464] (4 proteins)
   automatically mapped to Pfam PF00483

6. Protein Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain [142688] (1 species)

7. Species Potato (Solanum tuberosum) [TaxId:4113] [142689] (3 PDB entries)
   Uniprot P23509 80-386

8. Domain d1yp3d2: 1yp3 D:13-316 [123813]
   Other proteins in same PDB: d1yp3a1, d1yp3b1, d1yp3c1, d1yp3d1
   automated match to d1yp2a2
   complexed with atp, so4

Details for d1yp3d2

PDB Entry: 1yp3, 2.6 Å

PDB Description: Crystal structure of potato tuber ADP-glucose pyrophosphorylase in complex with ATP

PDB Compounds: (D:) Glucose-1-phosphate adenylyltransferase small subunit

SCOPe Domain Sequences for d1yp3d2:

Sequence, based on SEQRES records:

>d1yp3d2 c.68.1.6 (D:13-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
ldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniskiyv
ltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgtadavrqylwlfe
ehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegri
iefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgan
dfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiy
tqpr

Sequence, based on observed residues (ATOM records):

>d1yp3d2 c.68.1.6 (D:13-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
ldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniskiyv
ltqfnsaslnrhlsraynegfvevlaaqqspegtadavrqylwlfeehtvleylilagdh
lyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeqlqa
mkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgatslg
mrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqpr

Timeline for d1yp3d2:

• d1yp3d2 first appeared in SCOP 1.73
  
• d1yp3d2 appears in SCOPe 2.05
  
• d1yp3d2 appears in SCOPe 2.07
  
• d1yp3d2 appears in the current release, SCOPe 2.08