SCOPe 2.08: Domain d1ykwb1: 1ykw B:146-428

Lineage for d1ykwb1 (1ykw B:146-428)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (14 species)

7. Species Chlorobium tepidum [TaxId:1097] [117389] (2 PDB entries)
   Uniprot Q8KBL4 1-428

8. Domain d1ykwb1: 1ykw B:146-428 [123567]
   Other proteins in same PDB: d1ykwa2, d1ykwb2
   automated match to d1ykwa1

Details for d1ykwb1

PDB Entry: 1ykw, 2 Å

PDB Description: crystal structure of a novel rubisco-like protein from the green sulfur bacterium chlorobium tepidum

PDB Compounds: (B:) RuBisCO-like protein

SCOPe Domain Sequences for d1ykwb1:

Sequence, based on SEQRES records:

>d1ykwb1 c.1.14.1 (B:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
egpkfgieglrdilnahgrpiffgvvkpniglspgefaeiayqswlggldiakddemlad
vtwssieeraahlgkarrkaeaetgepkiylanitdevdslmekhdvavrnganallina
lpvglsavrmlsnytqvplighfpfiasfsrmekygihskvmtklqrlagldavimpgfg
drvmtpeeevlenviectkpmgrikpclpvpggsdsaltlqtvyekvgnvdfgfvpgrgv
fghpmgpkagaksirqaweaieqgisietwaethpelqamvdq

Sequence, based on observed residues (ATOM records):

>d1ykwb1 c.1.14.1 (B:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
egpkfgieglrdilnahgrpiffgvvkpnlspgefaeiayqswlggldiakddemladvt
wssieeraahlgkarrkaeaetgepkiylanitdevdslmekhdvavrnganallinalp
vglsavrmlsnytqvplighfpfiasfsrmekygihskvmtklqrlagldavimpgfgdr
vmtpeeevlenviectkpmgrikpclpvpggsdsaltlqtvyekvgnvdfgfvpgrgvfg
hpmgpkagaksirqaweaieqgisietwaethpelqamvdq

Timeline for d1ykwb1:

• d1ykwb1 first appeared in SCOP 1.73
  
• d1ykwb1 appears in SCOPe 2.07