Lineage for d1yj5a1 (1yj5 A:144-338)

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 712195Fold c.108: HAD-like [56783] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 712196Superfamily c.108.1: HAD-like [56784] (23 families) (S)
    usually contains an insertion (sub)domain after strand 1
  5. 712378Family c.108.1.9: phosphatase domain of polynucleotide kinase [82385] (2 proteins)
    no insertion subdomains
  6. 712379Protein 5' polynucleotide kinase-3' phosphatase, middle domain [142154] (1 species)
  7. 712380Species Mouse (Mus musculus) [TaxId:10090] [142155] (1 PDB entry)
  8. 712381Domain d1yj5a1: 1yj5 A:144-338 [123380]
    Other proteins in same PDB: d1yj5a2, d1yj5b2, d1yj5c1
    complexed with so4

Details for d1yj5a1

PDB Entry: 1yj5 (more details), 2.8 Å

PDB Description: Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme
PDB Compounds: (A:) 5' polynucleotide kinase-3' phosphatase catalytic domain

SCOP Domain Sequences for d1yj5a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

SCOP Domain Coordinates for d1yj5a1:

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Timeline for d1yj5a1: