SCOPe 2.03: Domain d1yfib_: 1yfi B:

Lineage for d1yfib_ (1yfi B:)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (34 families)

5. Family c.52.1.23: Restriction endonuclease MspI [110624] (1 protein)
   automatically mapped to Pfam PF09208

6. Protein Restriction endonuclease MspI [110625] (1 species)

7. Species Moraxella sp. [TaxId:479] [110626] (2 PDB entries)
   Uniprot P11405

8. Domain d1yfib_: 1yfi B: [123069]
   automated match to d1sa3a_
   protein/DNA complex

Details for d1yfib_

PDB Entry: 1yfi, 2.7 Å

PDB Description: Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group

PDB Compounds: (B:) Type II restriction enzyme MspI

SCOPe Domain Sequences for d1yfib_:

Sequence; same for both SEQRES and ATOM records:

>d1yfib_ c.52.1.23 (B:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}
mrtellsklyddfgidqlphtqhgvtsdrlgklyekyildifkdieslkkyntnafpqek
disskllkalnldldniidvsssdtdlgrtiaggspktdatirftfhnqssrlvplnikh
sskkkvsiaeydvetictgvgisdgelkelirkhqndqsaklftpvqkqrltellepyre
rfirwcvtlraeksegnilhpdllirfqvidreyvdvtikniddyvsdriaegskarkpg
fgtglnwtyasgskakkmqfkg

Timeline for d1yfib_:

• d1yfib_ first appeared in SCOP 1.73, called d1yfib1
  
• d1yfib_ appears in SCOPe 2.02
  
• d1yfib_ appears in SCOPe 2.04
  
• d1yfib_ appears in the current release, SCOPe 2.08