SCOPe 2.03: Domain d1v5vb2: 1v5v B:3-312

Lineage for d1v5vb2 (1v5v B:3-312)

1. Root: SCOPe 2.03

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.250: Folate-binding domain [103024] (1 superfamily)
   duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands

4. Superfamily d.250.1: Folate-binding domain [103025] (2 families)
   some topological similarity to Formylmethanofuran:tetrahydromethanopterin formyltransferase

5. Family d.250.1.1: Aminomethyltransferase folate-binding domain [103026] (4 proteins)

6. Protein Glycine cleavage system T protein, GcvT [111012] (4 species)

7. Species Pyrococcus horikoshii [TaxId:53953] [117996] (1 PDB entry)
   Uniprot O58888

8. Domain d1v5vb2: 1v5v B:3-312 [113542]
   Other proteins in same PDB: d1v5va1, d1v5vb1
   complexed with gol, peg

Details for d1v5vb2

PDB Entry: 1v5v, 1.5 Å

PDB Description: Crystal Structure of a Component of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at 1.5 A Resolution

PDB Compounds: (B:) Aminomethyltransferase

SCOPe Domain Sequences for d1v5vb2:

Sequence; same for both SEQRES and ATOM records:

>d1v5vb2 d.250.1.1 (B:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
qmvkrvhifdwhkeharkieefagwempiwyssikeehlavrnavgifdvshmgeivfrg
kdalkflqyvttndiskppaisgtytlvlnergaikdetlvfnmgnneylmicdsdafek
lyawftylkrtieqftkldleielktydiamfavqgpkardlakdlfgidinemwwfqar
wveldgikmllsrsgytgengfevyiedanpyhpdeskrgepekalhvwerileegkkyg
ikpcglgardtlrleagytlygnetkelqllstdidevtplqanlefaiywdkdfigkda
llkqkergvg

Timeline for d1v5vb2:

• d1v5vb2 first appeared in SCOP 1.71
  
• d1v5vb2 appears in SCOPe 2.02
  
• d1v5vb2 appears in SCOPe 2.04
  
• d1v5vb2 appears in the current release, SCOPe 2.08