SCOP 1.75: Domain d1u08b_: 1u08 B:

Lineage for d1u08b_ (1u08 B:)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (9 families)

5. Family c.67.1.1: AAT-like [53384] (16 proteins)

6. Protein Putative methionine aminotransferase YdbL [110679] (1 species)

7. Species Escherichia coli [TaxId:562] [110680] (1 PDB entry)
   Uniprot P77806

8. Domain d1u08b_: 1u08 B: [107544]
   complexed with plp

Details for d1u08b_

PDB Entry: 1u08, 2.35 Å

PDB Description: Crystal Structure and Reactivity of YbdL from Escherichia coli Identify a Methionine Aminotransferase Function.

PDB Compounds: (B:) Hypothetical aminotransferase ybdL

SCOP Domain Sequences for d1u08b_:

Sequence, based on SEQRES records:

>d1u08b_ c.67.1.1 (B:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}
plipqsklpqlgttiftqmsalaqqhqainlsqgfpdfdgprylqerlahhvaqganqya
pmtgvqalreaiaqkterlygyqpdadsditvtagatealyaaitalvrngdevicfdps
ydsyapaialsggivkrmalqpphfrvdwqefaallsertrlvilntphnpsatvwqqad
faalwqaiagheifvisdevyehinfsqqghasvlahpqlreravavssfgktyhmtgwk
vgycvapapisaeirkvhqyltfsvntpaqlaladmlraepehylalpdfyrqkrdilvn
alnesrleilpcegtyfllvdysavstlddvefcqwltqehgvaaiplsvfcadpfphkl
irlcfakkestllaaaerlrql

Sequence, based on observed residues (ATOM records):

>d1u08b_ c.67.1.1 (B:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}
plipqsklptiftqmsalaqqhqainlsqgfpdfdgprylqerlahhvaqganqyapmtg
vqalreaiaqkterlygyqpdadsditvtagatealyaaitalvrngdevicfdpsydsy
apaialsggivkrmalqpphfrvdwqefaallsertrlvilntphnpsatvwqqadfaal
wqaiagheifvisdevyehinfsqqghasvlahpqlreravavssfgktyhmtgwkvgyc
vapapisaeirkvhqyltfsvntpaqlaladmlraepehylalpdfyrqkrdilvnalne
srleilpcegtyfllvdysavstlddvefcqwltqehgvaaiplsvfcadpfphklirlc
fakkestllaaaerlrql

Timeline for d1u08b_:

• d1u08b_ first appeared in SCOP 1.69
  
• d1u08b_ appears in SCOP 1.73
  
• d1u08b_ appears in SCOPe 2.01
  
• d1u08b_ appears in the current release, SCOPe 2.08