Lineage for d1u08b_ (1u08 B:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2895166Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2895167Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2895168Family c.67.1.1: AAT-like [53384] (17 proteins)
  6. 2895537Protein Putative methionine aminotransferase YdbL [110679] (1 species)
  7. 2895538Species Escherichia coli [TaxId:562] [110680] (1 PDB entry)
    Uniprot P77806
  8. 2895540Domain d1u08b_: 1u08 B: [107544]
    complexed with plp

Details for d1u08b_

PDB Entry: 1u08 (more details), 2.35 Å

PDB Description: Crystal Structure and Reactivity of YbdL from Escherichia coli Identify a Methionine Aminotransferase Function.
PDB Compounds: (B:) Hypothetical aminotransferase ybdL

SCOPe Domain Sequences for d1u08b_:

Sequence, based on SEQRES records: (download)

>d1u08b_ c.67.1.1 (B:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}
plipqsklpqlgttiftqmsalaqqhqainlsqgfpdfdgprylqerlahhvaqganqya
pmtgvqalreaiaqkterlygyqpdadsditvtagatealyaaitalvrngdevicfdps
ydsyapaialsggivkrmalqpphfrvdwqefaallsertrlvilntphnpsatvwqqad
faalwqaiagheifvisdevyehinfsqqghasvlahpqlreravavssfgktyhmtgwk
vgycvapapisaeirkvhqyltfsvntpaqlaladmlraepehylalpdfyrqkrdilvn
alnesrleilpcegtyfllvdysavstlddvefcqwltqehgvaaiplsvfcadpfphkl
irlcfakkestllaaaerlrql

Sequence, based on observed residues (ATOM records): (download)

>d1u08b_ c.67.1.1 (B:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}
plipqsklptiftqmsalaqqhqainlsqgfpdfdgprylqerlahhvaqganqyapmtg
vqalreaiaqkterlygyqpdadsditvtagatealyaaitalvrngdevicfdpsydsy
apaialsggivkrmalqpphfrvdwqefaallsertrlvilntphnpsatvwqqadfaal
wqaiagheifvisdevyehinfsqqghasvlahpqlreravavssfgktyhmtgwkvgyc
vapapisaeirkvhqyltfsvntpaqlaladmlraepehylalpdfyrqkrdilvnalne
srleilpcegtyfllvdysavstlddvefcqwltqehgvaaiplsvfcadpfphklirlc
fakkestllaaaerlrql

SCOPe Domain Coordinates for d1u08b_:

Click to download the PDB-style file with coordinates for d1u08b_.
(The format of our PDB-style files is described here.)

Timeline for d1u08b_: