Lineage for Species: Archaeon Methanocaldococcus jannaschii

  1. Root: SCOP 1.67
  2. 405194Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
  3. 417481Fold d.115: YrdC/RibB [55820] (1 superfamily)
    core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other
  4. 417482Superfamily d.115.1: YrdC/RibB [55821] (2 families) (S)
  5. 417495Family d.115.1.2: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64372] (1 protein)
    contains one additional helix in the C-terminal extension
  6. 417496Protein 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64373] (3 species)
  7. 417497Species Archaeon Methanocaldococcus jannaschii [TaxId:2190] [103219] (2 PDB entries)

PDB entries in Species: Archaeon Methanocaldococcus jannaschii:

  1. Domain(s) for 1pvw:
    1. 417500Domain d1pvwa_: 1pvw A: [95192]
    2. 417501Domain d1pvwb_: 1pvw B: [95193]
    3. 417502Domain d1pvwc_: 1pvw C: [95194]
      complexed with ca, po4, zn
  2. Domain(s) for 1pvy:
    1. 417498Domain d1pvya_: 1pvy A: [95195]
    2. 417499Domain d1pvyb_: 1pvy B: [95196]
      complexed with ca, r5p, zn; mutant

More info for Species Archaeon Methanocaldococcus jannaschii [TaxId:2190] from d.115.1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB

Timeline for Species Archaeon Methanocaldococcus jannaschii [TaxId:2190] from d.115.1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB:

  • Species Archaeon Methanocaldococcus jannaschii [TaxId:2190] from d.115.1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB is new in SCOP 1.67
  • Species Archaeon Methanocaldococcus jannaschii [TaxId:2190] from d.115.1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB appears in SCOP 1.69
  • Species Archaeon Methanocaldococcus jannaschii [TaxId:2190] from d.115.1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB appears in the current release, SCOPe 2.07, called Species Methanocaldococcus jannaschii [TaxId:2190] from d.115.1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB