SCOPe 2.08: Family a.211.1.1: HD domain

Lineage for Family a.211.1.1: HD domain

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.211: HD-domain/PDEase-like [109603] (1 superfamily)
   multihelical; consists of two different alpha-helical bundles

4. Superfamily a.211.1: HD-domain/PDEase-like [109604] (9 families)

5. Family a.211.1.1: HD domain [101340] (15 proteins)
   Pfam PF01966; metal dependent phosphohydrolases

Proteins:

1. 5'-nucleotidase YfbR [116969] (1 species)

   • Species Escherichia coli [TaxId:562] [116970] (3 PDB entries)
     Uniprot P76491
     Structural genomics target

2. CRISPR-Cas type III-A interference complex protein Csm1 [419202] (2 species)

   1. Species Streptococcus thermophilus ND03 [TaxId:767463] [419715] (1 PDB entry)

   2. Species Thermococcus onnurineus NA1 [TaxId:523850] [419714] (1 PDB entry)

3. Hypothetical protein AF1432 [140763] (1 species)

   • Species Archaeoglobus fulgidus [TaxId:2234] [140764] (2 PDB entries)
     Uniprot O28840 7-172! Uniprot O28840 7-173

4. Hypothetical protein aq_1910 [140765] (1 species)
   elaborated with additional structures in C-terminal extension

   • Species Aquifex aeolicus [TaxId:63363] [140766] (1 PDB entry)
     Uniprot O67745 1-369

5. Hypothetical protein Atu1052 [158725] (1 species)

   • Species Agrobacterium tumefaciens [TaxId:358] [158726] (1 PDB entry)
     Uniprot Q8UGI5 6-205

6. Hypothetical protein EF1143 [140767] (1 species)
   Probable ortholog of aq_1910

   • Species Enterococcus faecalis [TaxId:1351] [140768] (4 PDB entries)
     Uniprot Q836G9 1-453

7. Oxetanocin-like protein PF0395 [116971] (1 species)
   similar fold and oligomeric structure to 5'-nucleotidase YfbR

   • Species Pyrococcus furiosus [TaxId:2261] [116972] (1 PDB entry)
     Uniprot Q8U3R1

8. Predicted hydrolase mes0020 [158719] (1 species)

   • Species Uncultured thermotogales bacterium [TaxId:221214] [158720] (1 PDB entry)
     Uniprot Q1EM40 1-217

9. Stringent response-like protein RelA N-terminal domain [101341] (1 species)

   • Species Streptococcus equisimilis [TaxId:119602] [101342] (1 PDB entry)

10. Uncharacterized protein BH2835 [158727] (1 species)

    • Species Bacillus halodurans [TaxId:86665] [158728] (1 PDB entry)
      Uniprot Q9K916 2-213

11. Uncharacterized protein BT9727_1981 [158731] (1 species)

    • Species Bacillus thuringiensis [TaxId:1428] [158732] (1 PDB entry)
      Uniprot Q6HJG6 2-214

12. Uncharacterized protein Lin1889 [158721] (1 species)

    • Species Listeria innocua [TaxId:1642] [158722] (1 PDB entry)
      Uniprot Q92AN1 1-201

13. Uncharacterized protein LP2664 [158729] (1 species)

    • Species Lactobacillus plantarum [TaxId:1590] [158730] (1 PDB entry)
      Uniprot Q88U62 1-215

14. Uncharacterized protein SE1688 [158723] (1 species)

    • Species Staphylococcus epidermidis [TaxId:1282] [158724] (1 PDB entry)
      Uniprot Q8CRP0 1-216

15. automated matches [190349] (3 species)
    not a true protein

    1. Species Aquifex aeolicus [TaxId:63363] [187322] (1 PDB entry)

    2. Species Escherichia coli [311188] (1 PDB entry)

    3. Species Pyrococcus horikoshii OT3 [TaxId:70601] [187565] (1 PDB entry)

More info for Family a.211.1.1: HD domain

Timeline for Family a.211.1.1: HD domain:

• Family a.211.1.1: HD domain first appeared in SCOP 1.67, called Family a.201.1.1: HD domain
  
• Family a.211.1.1: HD domain appears in SCOPe 2.07