PDB entry 7jpd

View 7jpd on RCSB PDB site
Description: Crystal structure of the trimeric full length mature hemagglutinin from influenza A virus A/Fort Monmouth/1/1947
Class: viral protein
Keywords: National Institutes of Allergy and Infectious Diseases, NIAID, flu, seasonal flu, vaccine, HA, antigen, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, VIRAL PROTEIN
Deposited on 2020-08-07, released 2021-10-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-10-06, with a file datestamp of 2021-10-01.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (2-328)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d7jpda1, d7jpda2
  • Chain 'B':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (2-328)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d7jpdb1, d7jpdb2
  • Chain 'C':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (2-328)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d7jpdc1, d7jpdc2
  • Chain 'D':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (2-328)
      • expression tag (0-1)
  • Chain 'E':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (2-328)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d7jpde1, d7jpde2
  • Chain 'F':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (2-328)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d7jpdf1, d7jpdf2
  • Chain 'a':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (0-164)
      • expression tag (165-169)
  • Chain 'b':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (0-164)
      • expression tag (165-169)
  • Chain 'c':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (0-164)
      • expression tag (165-169)
  • Chain 'd':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (0-164)
      • expression tag (165-169)
    Domains in SCOPe 2.08: d7jpdd_
  • Chain 'e':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (0-164)
      • expression tag (165-169)
  • Chain 'f':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:367120]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q20MG8 (0-164)
      • expression tag (165-169)
  • Heterogens: BMA, NAG, MAN, EDO, IOD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7jpdA (A:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwg
vhhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpv
tigecpkyvkstklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jpdA (A:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpk
erswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwgv
hhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdt
iifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpvt
igecpkyvkstklrmvtglrnip

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7jpdB (B:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwg
vhhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpv
tigecpkyvkstklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jpdB (B:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpk
erswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwgv
hhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdt
iifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpvt
igecpkyvkstklrmvtglrnip

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7jpdC (C:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwg
vhhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpv
tigecpkyvkstklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jpdC (C:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpk
erswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwgv
hhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdt
iifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpvt
igecpkyvkstklrmvtglrnip

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7jpdE (E:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwg
vhhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpv
tigecpkyvkstklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jpdE (E:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpk
erswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwgv
hhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdt
iifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpvt
igecpkyvkstklrmvtglrnip

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7jpdF (F:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwg
vhhpsniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpv
tigecpkyvkstklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jpdF (F:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpeceslrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpkers
wpkhnitrgvtaacshagkssfyknllwltetngsypklsksyvnnkekevlvlwgvhhp
sniedqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdtiif
eangnliapwyafalsrgfgsgiitsnasmdecdtkcqtpqgainsslpfqnihpvtige
cpkyvkstklrmvtglrnip

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.

  • Chain 'd':
    Sequence, based on SEQRES records: (download) 
    >7jpdd (d:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklekrmenlnkkvddgfldiwtynaellvllenertldfhdsnvknlye
kvknqlrnnakeigngcfefyhkcnnecmesvkngtydypkyseeflvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jpdd (d:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklekrmenlnkkvddgfldiwtynaellvllenertldfhdsnvknlye
kvknqlrnnakeigngcfefyhkcnnecmesvkngtydyp

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.