PDB entry 7c9r

View 7c9r on RCSB PDB site
Description: structure of photosynthetic lh1-rc super-complex of thiorhodovibrio strain 970
Class: photosynthesis
Keywords: lh1-rc, photosynthesis, purple bacteria
Deposited on 2020-06-07, released 2020-10-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: EM
Resolution: 2.82 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9r0_
  • Chain '1':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9r2_
  • Chain '3':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9r4_
  • Chain '5':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9r6_
  • Chain '7':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain '8':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9r8_
  • Chain '9':
    Compound: Alpha subunit 2 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: Alpha subunit 1 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9ra_
  • Chain 'B':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rb_
  • Chain 'C':
    Compound: Photosynthetic reaction center cytochrome c subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rc_
  • Chain 'D':
    Compound: Alpha subunit 1 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9re_
  • Chain 'F':
    Compound: Alpha subunit 1 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rg_
  • Chain 'H':
    Compound: Photosynthetic reaction center, subunit H, bacterial
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rh1, d7c9rh2
  • Chain 'I':
    Compound: Alpha subunit 1 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rj_
  • Chain 'K':
    Compound: Alpha subunit 1 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: L subunit of the reaction center
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rl_
  • Chain 'M':
    Compound: reaction center protein m chain
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rm_
  • Chain 'N':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rn_
  • Chain 'O':
    Compound: Alpha subunit 1 of light-harvesting 1 complex
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rp_
  • Chain 'Q':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rr_
  • Chain 'S':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rt_
  • Chain 'U':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rv_
  • Chain 'W':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rx_
  • Chain 'Y':
    Compound: LHC domain-containing protein
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: Antenna complex alpha/beta subunit
    Species: Thiorhodovibrio sp. 970 [TaxId:631362]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c9rz_
  • Heterogens: HEM, MG, CA, DGA, PGV, BCL, BPH, UQ8, 8K6, FE, MQ8, CDL, H4X, LMT

PDB Chain Sequences:

  • Chain '0':
    Sequence, based on SEQRES records: (download) 
    >7c9r0 (0:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9r0 (0:)
ttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain '1':
    No sequence available.

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >7c9r2 (2:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9r2 (2:)
ttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain '3':
    No sequence available.

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >7c9r4 (4:)
maekpstglteseakefhglfmasmtlwfglvvlahilswmyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9r4 (4:)
ekpstglteseakefhglfmasmtlwfglvvlahilswmyrpwl

  • Chain '5':
    No sequence available.

  • Chain '6':
    Sequence, based on SEQRES records: (download) 
    >7c9r6 (6:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9r6 (6:)
ksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain '7':
    No sequence available.

  • Chain '8':
    Sequence, based on SEQRES records: (download) 
    >7c9r8 (8:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9r8 (8:)
sttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain '9':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7c9rA (A:)
mnaksfdgmhklwmimnpvstlwaififqiflgllihmvvlssdlnwhddqipvgyqlqg
etlpvnlemkaaq

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rA (A:)
aksfdgmhklwmimnpvstlwaififqiflgllihmvvlssdlnwhddqipvgyqlqget
lpvnlemkaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7c9rB (B:)
maekpstglteseakefhglfmasmtlwfglvvlahilswmyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rB (B:)
kpstglteseakefhglfmasmtlwfglvvlahilswmyrpwl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7c9rC (C:)
mkqrnhhalallslgvaafitgcdfppqdvvqtgyrglgmqqnynpkllqkvidatqvpd
aipaatpggalakdvyknvqvlgdlsvnefnrtmvalttwvapnegctychegtnwesdg
vytkiasrrmlemtrdtnsnwtghvadtgvtcytchrgkpvpehvwttdpgpdipsvfps
ngqntigynvaytalpfdpftpfllgeneirvsgntdlrntnrksikqaewtfalmthfs
ealgvnctychnsrafmdwnqstpkrvpawhairnvrdiniqyveplgevlpasrkgplg
dpfkvncltchqgaykplfgvpmakdypalyetaaveeeapaeaapaaeaeaapaeavpv
aeapaeaapveaapaaeaeaapaeaapaappvpadr

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rC (C:)
cdfppqdvvqtgyrglgmqqnynpkllqkvidatqvpdaipaatpggalakdvyknvqvl
gdlsvnefnrtmvalttwvapnegctychegtnwesdgvytkiasrrmlemtrdtnsnwt
ghvadtgvtcytchrgkpvpehvwttdpgpdipsvfpsngqntigynvaytalpfdpftp
fllgeneirvsgntdlrntnrksikqaewtfalmthfsealgvnctychnsrafmdwnqs
tpkrvpawhairnvrdiniqyveplgevlpasrkgplgdpfkvncltchqgaykplfgvp
makdypalyet

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7c9rE (E:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rE (E:)
sttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7c9rG (G:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rG (G:)
ttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7c9rH (H:)
mefgyitqyfdlaqvtlwafwlsllsviffnrredkregypqeavqifgktiltegfpfm
papktfklphnggdvvkpgperpqydfkleqvdrfagaayrpvgnpmlagvgpgayavra
nkpdltnagdprivpmrvakhfavvdkdpdprgmtvigadgqvggkvteiwvdraepqvr
yleleagnkkkvlvpialcvikgqkrevkvrsingihfndvptlsnydqitlaeedkvsa
yygagtlyatpnraesvl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rH (H:)
efgyitqyfdlaqvtlwafwlsllsviffnrredkregypqeavqifgktiltegfpfmp
apktfklphnggdvvkpgperpqydfkleqvdrfagaayrpvgnpmlagvgpgayavran
kpdltnagdprivpmrvakhfavvdkdpdprgmtvigadgqvggkvteiwvdraepqvry
leleagnkkkvlvpialcvikgqkrevkvrsingihfndvptlsnydqitlaeedkvsay
ygagtlyatpnraesvl

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7c9rJ (J:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rJ (J:)
ttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7c9rL (L:)
mallnfekkyrvrggtlvggdlfdfwvgpfyvgffgvsavffatlgtmlilfgaaigptl
niwqisiappdlsvglgfapiregglwqviticavgafvswalrqveiarklgmglhvpf
afsfailayltlvffrpvllgawghafpyglfshldwvsnvgyqtlhfhynpahmlaisf
ffintlalamhgslilsvvnpqkgeevktaehentvfrdivgysigalaihrlglflain
aafwsavcmiltgpfwtrgwpewwmwwpnlpiw

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rL (L:)
allnfekkyrvrggtlvggdlfdfwvgpfyvgffgvsavffatlgtmlilfgaaigptln
iwqisiappdlsvglgfapiregglwqviticavgafvswalrqveiarklgmglhvpfa
fsfailayltlvffrpvllgawghafpyglfshldwvsnvgyqtlhfhynpahmlaisff
fintlalamhgslilsvvnpqkgeevktaehentvfrdivgysigalaihrlglflaina
afwsavcmiltgpfwtrgwpewwmwwpnlpiw

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7c9rM (M:)
mpeyqnifnkvqvrepaypgvelpkgslprvgkpifsywlgkigdaqigplylggwgias
lisgfialeviglnmlasvgwdprlflkeffwlgleppppayglsipplaeggwwliagl
fltmslllwwvrvykrakdlgmgthlswafavailffltlgfirpvlmgswgeappfgif
phldwtaaisirygnfyynpfhglsiafmygsavlfamhggtilavsryggdreidqitd
rgtaaeramlfwrwcmgfnasmesihrwawwfavfciinsilgiiltgtvvdnwylwavk
hgvapsypseltidnpyltqgvaq

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rM (M:)
peyqnifnkvqvrepaypgvelpkgslprvgkpifsywlgkigdaqigplylggwgiasl
isgfialeviglnmlasvgwdprlflkeffwlgleppppayglsipplaeggwwliaglf
ltmslllwwvrvykrakdlgmgthlswafavailffltlgfirpvlmgswgeappfgifp
hldwtaaisirygnfyynpfhglsiafmygsavlfamhggtilavsryggdreidqitdr
gtaaeramlfwrwcmgfnasmesihrwawwfavfciinsilgiiltgtvvdnwylwavkh
gvapsypseltidnpylt

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >7c9rN (N:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rN (N:)
sttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >7c9rP (P:)
maekpstglteseakefhglfmasmtlwfglvvlahilswmyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rP (P:)
pstglteseakefhglfmasmtlwfglvvlahilswmyrpwl

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7c9rR (R:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rR (R:)
eksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7c9rT (T:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rT (T:)
ksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >7c9rV (V:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rV (V:)
ksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >7c9rX (X:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rX (X:)
ttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >7c9rZ (Z:)
maeksttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c9rZ (Z:)
sttglteaeskefhgifmasmtlwfglvvlahilswlyrpwl