PDB entry 7c0o

View 7c0o on RCSB PDB site
Description: Crystal structure of a dinucleotide-binding protein (Y56F) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine
Class: transport protein
Keywords: c-di-GMP/AMP, Substrate-binding protein, Thermus thermophilus, tRNA synthesis and/or modification, Venus Fly-trap mechanism, UgpB, TRANSPORT PROTEIN
Deposited on 2020-05-01, released 2021-03-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sugar ABC transporter, periplasmic sugar-binding protein
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHA0379
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SLB4 (2-End)
      • expression tag (1)
      • engineered mutation (57)
    Domains in SCOPe 2.08: d7c0oa1, d7c0oa2
  • Chain 'B':
    Compound: Sugar ABC transporter, periplasmic sugar-binding protein
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHA0379
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SLB4 (2-End)
      • expression tag (1)
      • engineered mutation (57)
    Domains in SCOPe 2.08: d7c0ob1, d7c0ob2
  • Heterogens: FGO, CO2, EDO, GOL, NA, CO3, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7c0oA (A:)
mmkpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggfrd
lstkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggv
vygvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfa
yfffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsv
dtsagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflef
vlspraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweq
irfdilgqaikeailnkadpkaaldraqklaedllssrtrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0oA (A:)
mkpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggfrdl
stkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggvv
ygvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfay
fffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsvd
tsagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflefv
lspraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweqi
rfdilgqaikeailnkadpkaaldraqklaedllssr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7c0oB (B:)
mmkpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggfrd
lstkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggv
vygvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfa
yfffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsv
dtsagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflef
vlspraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweq
irfdilgqaikeailnkadpkaaldraqklaedllssrtrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0oB (B:)
mkpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggfrdl
stkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggvv
ygvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfay
fffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsvd
tsagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflefv
lspraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweqi
rfdilgqaikeailnkadpkaaldraqklaedllssr