PDB entry 6vd1

View 6vd1 on RCSB PDB site
Description: Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in complex with S-adenosylmethionine and PPNP
Class: transferase
Keywords: methionine adenosyltransferase, SAM synthase, transferase
Deposited on 2019-12-23, released 2020-02-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 1.32 Å
R-factor: N/A
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: S-adenosylmethionine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SAM2, At4g01850, T7B11.11
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17562 (3-394)
      • expression tag (395-397)
    Domains in SCOPe 2.07: d6vd1a1, d6vd1a2, d6vd1a3, d6vd1a4
  • Chain 'B':
    Compound: S-adenosylmethionine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SAM2, At4g01850, T7B11.11
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17562 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.07: d6vd1b1, d6vd1b2, d6vd1b3, d6vd1b4
  • Heterogens: MG, PPK, SAM, K, MPO, 1PE, PGE, EDO, PDO, PGR, PE8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vd1A (A:)
snametflftsesvneghpdklcdqisdavldacleqdpdskvacetctktnmvmvfgei
ttkatidyekivrdtcrsigfisddvgldadkckvlvnieqqspdiaqgvhghftkrped
igagdqghmfgyatdetpelmplshvlatkigarltevrkngtcrwlrpdgktqvtveyy
ndngamvpvrvhtvlistqhdetvtndeiardlkehvikpiipekylddktifhlnpsgr
fviggphgdagltgrkiiidtyggwgahgggafsgkdptkvdrsgayivrqaaksvvang
marralvqvsyaigvpeplsvfvdtygtglipdkeilkivketfdfrpgmmtinldlkrg
gngrfqktaayghfgrddpdftwevvkplkwdkpqlnnigsg

    Sequence, based on observed residues (ATOM records): (download) 
    >6vd1A (A:)
metflftsesvneghpdklcdqisdavldacleqdpdskvacetctktnmvmvfgeittk
atidyekivrdtcrsigfisddvgldadkckvlvnieqqspdiaqgvhghftkrpediga
gdqghmfgyatdetpelmplshvlatkigarltevrkngtcrwlrpdgktqvtveyyndn
gamvpvrvhtvlistqhdetvtndeiardlkehvikpiipekylddktifhlnpsgrfvi
ggphgdagltgrkiiidtyggwgahgggafsgkdptkvdrsgayivrqaaksvvangmar
ralvqvsyaigvpeplsvfvdtygtglipdkeilkivketfdfrpgmmtinldlkrggng
rfqktaayghfgrddpdftwevvkplkwdkpqlnn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vd1B (B:)
snametflftsesvneghpdklcdqisdavldacleqdpdskvacetctktnmvmvfgei
ttkatidyekivrdtcrsigfisddvgldadkckvlvnieqqspdiaqgvhghftkrped
igagdqghmfgyatdetpelmplshvlatkigarltevrkngtcrwlrpdgktqvtveyy
ndngamvpvrvhtvlistqhdetvtndeiardlkehvikpiipekylddktifhlnpsgr
fviggphgdagltgrkiiidtyggwgahgggafsgkdptkvdrsgayivrqaaksvvang
marralvqvsyaigvpeplsvfvdtygtglipdkeilkivketfdfrpgmmtinldlkrg
gngrfqktaayghfgrddpdftwevvkplkwdkpqlnnigsg

    Sequence, based on observed residues (ATOM records): (download) 
    >6vd1B (B:)
ametflftsesvneghpdklcdqisdavldacleqdpdskvacetctktnmvmvfgeitt
katidyekivrdtcrsigfisddvgldadkckvlvnieqqspdiaqgvhghftkrpedig
agdqghmfgyatdetpelmplshvlatkigarltevrkngtcrwlrpdgktqvtveyynd
ngamvpvrvhtvlistqhdetvtndeiardlkehvikpiipekylddktifhlnpsgrfv
iggphgdagltgrkiiidtyggwgahgggafsgkdptkvdrsgayivrqaaksvvangma
rralvqvsyaigvpeplsvfvdtygtglipdkeilkivketfdfrpgmmtinldlkrggn
grfqktaayghfgrddpdftwevvkplkwdkp