PDB entry 6t8e

View 6t8e on RCSB PDB site
Description: Crystal structure of native xylose isomerase from Piromyces E2 grown in yeast, in complex with xylose
Class: isomerase
Keywords: isomerase, TIM-barrel
Deposited on 2019-10-24, released 2020-01-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xylose isomerase
    Species: Piromyces sp. (strain E2) [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6t8ea_
  • Chain 'B':
    Compound: xylose isomerase
    Species: Piromyces sp. (strain E2) [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6t8eb_
  • Chain 'C':
    Compound: xylose isomerase
    Species: Piromyces sp. (strain E2) [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6t8ec_
  • Chain 'D':
    Compound: xylose isomerase
    Species: Piromyces sp. (strain E2) [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6t8ed_
  • Heterogens: CA, XLS, XYP, XYS, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6t8eA (A:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >6t8eA (A:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6t8eB (B:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >6t8eB (B:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6t8eC (C:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >6t8eC (C:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6t8eD (D:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >6t8eD (D:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq