PDB entry 6qkm

View 6qkm on RCSB PDB site
Description: Diallyl trisulfide inhibited sulfur oxygenase reductase
Class: oxidoreductase
Keywords: sulfur oxygenase reductase, 2-his-1-carboxylate facial triad, cysteine persulphuration, biogeochemical sulfur cycle, oxidoreductase
Deposited on 2019-01-29, released 2020-02-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sulfur oxygenase/reductase
    Species: ACIDIANUS AMBIVALENS [TaxId:2283]
    Gene: sor
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qkma_
  • Chain 'B':
    Compound: Sulfur oxygenase/reductase
    Species: ACIDIANUS AMBIVALENS [TaxId:2283]
    Gene: sor
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qkmb_
  • Chain 'C':
    Compound: Sulfur oxygenase/reductase
    Species: ACIDIANUS AMBIVALENS [TaxId:2283]
    Gene: sor
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qkmc_
  • Chain 'D':
    Compound: Sulfur oxygenase/reductase
    Species: ACIDIANUS AMBIVALENS [TaxId:2283]
    Gene: sor
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qkmd_
  • Chain 'E':
    Compound: Sulfur oxygenase/reductase
    Species: ACIDIANUS AMBIVALENS [TaxId:2283]
    Gene: sor
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qkme_
  • Chain 'F':
    Compound: Sulfur oxygenase/reductase
    Species: ACIDIANUS AMBIVALENS [TaxId:2283]
    Gene: sor
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qkmf_
  • Heterogens: CSS, FE, TSY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6qkmA (A:)
mpkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygg
akmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlxyscasqmiwgpwepiyeii
yanmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedai
vrtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpe
akntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegt
fwreylnenawrhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6qkmA (A:)
pkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygga
kmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlxyscasqmiwgpwepiyeiiy
anmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedaiv
rtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpea
kntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegtf
wreylne

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6qkmB (B:)
mpkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygg
akmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeii
yanmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedai
vrtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpe
akntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegt
fwreylnenawrhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6qkmB (B:)
pkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygga
kmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeiiy
anmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedaiv
rtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpea
kntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegtf
wreylne

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6qkmC (C:)
mpkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygg
akmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeii
yanmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedai
vrtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpe
akntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegt
fwreylnenawrhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6qkmC (C:)
pkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygga
kmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeiiy
anmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedaiv
rtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpea
kntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegtf
wreylne

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6qkmD (D:)
mpkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygg
akmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlxyscasqmiwgpwepiyeii
yanmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedai
vrtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpe
akntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegt
fwreylnenawrhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6qkmD (D:)
pkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygga
kmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlxyscasqmiwgpwepiyeiiy
anmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedaiv
rtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpea
kntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegtf
wreylne

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6qkmE (E:)
mpkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygg
akmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeii
yanmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedai
vrtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpe
akntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegt
fwreylnenawrhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6qkmE (E:)
pkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygga
kmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeiiy
anmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedaiv
rtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpea
kntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegtf
wreylne

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6qkmF (F:)
mpkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygg
akmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeii
yanmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedai
vrtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpe
akntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegt
fwreylnenawrhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6qkmF (F:)
pkpyvainmaelknepktfemfasvgpkvxmvtarhpgfvgfqnhiqigilpfgnrygga
kmdmtkesstvrvlqytfwkdwkdheemhrqnwsylfrlcyscasqmiwgpwepiyeiiy
anmpintemtdftavvgkkfaegkpldipvisqpygkrvvafaehsvipgkekqfedaiv
rtlemlkkapgflgamvlkeigvsgigsmqfgakgfhqvlenpgslepdpnnvmysvpea
kntpqqyivhvewantdalmfgmgrvllypelrqvhdevldtlvygpyirilnpmmegtf
wreylne