PDB entry 6oxm

View 6oxm on RCSB PDB site
Description: Crystal structure of L,L-diaminopimelate aminotransferase (DapL) from Verrucomicrobium spinosum
Class: transferase
Keywords: diaminopimelate aminotransferase, lysine biosynthesis, TRANSFERASE
Deposited on 2019-05-13, released 2020-07-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Diaminopimelate aminotransferase
    Species: Verrucomicrobium spinosum [TaxId:2736]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OXM (0-410)
    Domains in SCOPe 2.07: d6oxma_
  • Chain 'B':
    Compound: Diaminopimelate aminotransferase
    Species: Verrucomicrobium spinosum [TaxId:2736]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OXM (0-410)
    Domains in SCOPe 2.07: d6oxmb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6oxmA (A:)
malinenflklkagylfpeiarrvkaftegnpeaaqrlircgigdvtealpeavryamhe
avdelgnrstfkgygpeqgydflrnaiadndykarglpieadeifisdgskcdtgnildi
fgqgntiaitdpvypvyvdtnvmigntgeadengayaglvylkctpengfvpdipqekad
liylcypnnptgavatrpqleawvkyarengsvllydaayeafiqdptiphsifeiegar
dcaiefrsfsknggftgvrcayvvipkslmgrkkngeaqalhplwsrrhstkfngasyiv
qkgaealytdegksqtkaliehymgnaallveacknaglsvfggvnapyvwvgcpaglts
wqmfdkmlneanvvitpgsgfgsagegyfrisafnsranveevcrriaalk

    Sequence, based on observed residues (ATOM records): (download) 
    >6oxmA (A:)
malinenflklkagylfpeiarrvkaftegnpeaaqrlircgigdvtealpeavryamhe
avdelgnrpeqgydflrnaiadndykarglpieadeifisdgskcdtgnildifgqgnti
aitdpvypvyvdtnvmigntgeadengayaglvylkctpengfvpdipqekadliylcyp
nnptgavatrpqleawvkyarengsvllydaayeafiqdptiphsifeiegardcaiefr
sfsknggftgvrcayvvipkslmgrkkngeaqalhplwsrrhstkfngasyivqkgaeal
ytdegksqtkaliehymgnaallveacknaglsvfggvnapyvwvgcpagltswqmfdkm
lneanvvitpgsgfgsagegyfrisafnsranveevcrriaalk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6oxmB (B:)
malinenflklkagylfpeiarrvkaftegnpeaaqrlircgigdvtealpeavryamhe
avdelgnrstfkgygpeqgydflrnaiadndykarglpieadeifisdgskcdtgnildi
fgqgntiaitdpvypvyvdtnvmigntgeadengayaglvylkctpengfvpdipqekad
liylcypnnptgavatrpqleawvkyarengsvllydaayeafiqdptiphsifeiegar
dcaiefrsfsknggftgvrcayvvipkslmgrkkngeaqalhplwsrrhstkfngasyiv
qkgaealytdegksqtkaliehymgnaallveacknaglsvfggvnapyvwvgcpaglts
wqmfdkmlneanvvitpgsgfgsagegyfrisafnsranveevcrriaalk

    Sequence, based on observed residues (ATOM records): (download) 
    >6oxmB (B:)
malinenflklkagylfpeiarrvkaftegnpeaaqrlircgigdvtealpeavryamhe
avdelgnrpeqgydflrnaiadndykarglpieadeifisdgskcdtgnildifgqgnti
aitdpvypvyvdtnvmigntgeadengayaglvylkctpengfvpdipqekadliylcyp
nnptgavatrpqleawvkyarengsvllydaayeafiqdptiphsifeiegardcaiefr
sfsknggftgvrcayvvipkslmgrkkngeaqalhplwsrrhstkfngasyivqkgaeal
ytdegksqtkaliehymgnaallveacknaglsvfggvnapyvwvgcpagltswqmfdkm
lneanvvitpgsgfgsagegyfrisafnsranveevcrriaalk